fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G27650 ATU2AF35A U2 snRNP auxiliary factor small subunit, putative (.1.2)

>AT1G27650.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, HpaI, KpnI, NcoI, NdeI, NheI, NotI, PacI, SacI, SalI, SpeI, StyI, XbaI, XhoI
Name Recognition sequence Cut positions
EcoRI G|AATTC 664
EcoRV GAT|ATC 560
HindIII A|AGCTT 520
PstI CTGCA|G 365
PvuII CAG|CTG 368
SmaI CCC|GGG 798


Click here to view TAIR data

>AT1G27650.1 length:891
ATGGCGGAGC ATTTGGCTTC AATCTTTGGT ACTGAGAAAG ACAGAGTGAA 
50
TTGCCCTTTC TACTTCAAGA TTGGCGCTTG CCGTCATGGT GACCGGTGCT 
100
CGCGTCTTCA CAACCGTCCT ACCATCTCCC CAACACTCCT TCTTTCAAAC 
150
ATGTACCAAA GGCCTGACAT GATTACCCCT GGTGTTGACG CTCAGGGCCA 
200
ACCACTCGAC CCGCGTAAGA TTCAGGAGCA CTTTGAGGAT TTCTTTGAGG 
250
ATCTTTTTGA GGAGCTTGGA AAGTTTGGCG AGATAGAGAG CCTCAACATT 
300
TGTGACAACC TTGCTGACCA CATGATTGGC AACGTATATG TTCAGTTTAA 
350
GGAAGAGGAT CAGGCTGCAG CTGCTTTGCA GGCTCTGCAA GGTAGGTTCT 
400
ATTCAGGACG TCCCATCATT GCTGATTTCT CTCCTGTGAC GGATTTCCGC 
450
GAAGCCACGT GTAGGCAGTA TGAAGAAAAC AACTGCAACC GTGGTGGGTA 
500
CTGTAATTTC ATGCATGTGA AGCTTGTTTC GAGGGAACTA AGGAGAAAAC 
550
TCTTTGGGAG ATATCGGCGA TCATACCGCA GAGGAAGTAG AAGCAGGAGC 
600
AGAAGCAGGA GTATTAGCCC CAGGAACAAG AGAGATAATG ACCGACGTGA 
650
TCCTTCTCAC AGGGAATTCA GTCATCGGGA CAGAGATCGC GAGTTTTACC 
700
GTCATGGAAG TGGAAAAAGG AGCAGTGAGA GGTCGGAGAG GCAAGAGAGG 
750
GACGGTTCAA GGGGTAGGAG ACAAGCAAGC CCTAAACGAG GAGGGAGCCC 
800
GGGTGGCGGG AGGGAAGGAA GTGAGGAGAG GAGGGCAAGG ATTGAGCAAT 
850
GGAACAGAGA ACGGGAGGAG AAGGAAGAGG GAGGAGCATA A
900

>AT1G27650.1 longest ORF length:296
MAEHLASIFG TEKDRVNCPF YFKIGACRHG DRCSRLHNRP TISPTLLLSN 
50
MYQRPDMITP GVDAQGQPLD PRKIQEHFED FFEDLFEELG KFGEIESLNI 
100
CDNLADHMIG NVYVQFKEED QAAAALQALQ GRFYSGRPII ADFSPVTDFR 
150
EATCRQYEEN NCNRGGYCNF MHVKLVSREL RRKLFGRYRR SYRRGSRSRS 
200
RSRSISPRNK RDNDRRDPSH REFSHRDRDR EFYRHGSGKR SSERSERQER 
250
DGSRGRRQAS PKRGGSPGGG REGSEERRAR IEQWNREREE KEEGGA
300