fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G27650 ATU2AF35A U2 snRNP auxiliary factor small subunit, putative (.1.2)

>AT1G27650.2 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, HpaI, KpnI, NcoI, NdeI, NheI, NotI, PacI, SacI, SalI, SpeI, StyI, XbaI, XhoI
Name Recognition sequence Cut positions
EcoRI G|AATTC 514
EcoRV GAT|ATC 410
HindIII A|AGCTT 370
PstI CTGCA|G 215
PvuII CAG|CTG 218
SmaI CCC|GGG 648


Click here to view TAIR data

>AT1G27650.2 length:741
ATGTACCAAA GGCCTGACAT GATTACCCCT GGTGTTGACG CTCAGGGCCA 
50
ACCACTCGAC CCGCGTAAGA TTCAGGAGCA CTTTGAGGAT TTCTTTGAGG 
100
ATCTTTTTGA GGAGCTTGGA AAGTTTGGCG AGATAGAGAG CCTCAACATT 
150
TGTGACAACC TTGCTGACCA CATGATTGGC AACGTATATG TTCAGTTTAA 
200
GGAAGAGGAT CAGGCTGCAG CTGCTTTGCA GGCTCTGCAA GGTAGGTTCT 
250
ATTCAGGACG TCCCATCATT GCTGATTTCT CTCCTGTGAC GGATTTCCGC 
300
GAAGCCACGT GTAGGCAGTA TGAAGAAAAC AACTGCAACC GTGGTGGGTA 
350
CTGTAATTTC ATGCATGTGA AGCTTGTTTC GAGGGAACTA AGGAGAAAAC 
400
TCTTTGGGAG ATATCGGCGA TCATACCGCA GAGGAAGTAG AAGCAGGAGC 
450
AGAAGCAGGA GTATTAGCCC CAGGAACAAG AGAGATAATG ACCGACGTGA 
500
TCCTTCTCAC AGGGAATTCA GTCATCGGGA CAGAGATCGC GAGTTTTACC 
550
GTCATGGAAG TGGAAAAAGG AGCAGTGAGA GGTCGGAGAG GCAAGAGAGG 
600
GACGGTTCAA GGGGTAGGAG ACAAGCAAGC CCTAAACGAG GAGGGAGCCC 
650
GGGTGGCGGG AGGGAAGGAA GTGAGGAGAG GAGGGCAAGG ATTGAGCAAT 
700
GGAACAGAGA ACGGGAGGAG AAGGAAGAGG GAGGAGCATA A
750

>AT1G27650.2 longest ORF length:246
MYQRPDMITP GVDAQGQPLD PRKIQEHFED FFEDLFEELG KFGEIESLNI 
50
CDNLADHMIG NVYVQFKEED QAAAALQALQ GRFYSGRPII ADFSPVTDFR 
100
EATCRQYEEN NCNRGGYCNF MHVKLVSREL RRKLFGRYRR SYRRGSRSRS 
150
RSRSISPRNK RDNDRRDPSH REFSHRDRDR EFYRHGSGKR SSERSERQER 
200
DGSRGRRQAS PKRGGSPGGG REGSEERRAR IEQWNREREE KEEGGA
250