fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G27740 bHLH054, ROOT HAIR DEFECTIVE 6-LIKE 4(RSL4) root hair defective 6-like 4 (.1)

>AT1G27740.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, EcoRV, HpaI, KpnI, NcoI, NdeI, NheI, NotI, PacI, PstI, PvuII, SalI, SmaI, SpeI, StyI, XbaI, XhoI
Name Recognition sequence Cut positions
HindIII A|AGCTT 470
SacI GAGCT|C 687


Click here to view TAIR data

>AT1G27740.1 length:777
ATGGACGTTT TTGTTGATGG TGAATTGGAG TCTCTCTTGG GGATGTTCAA 
50
CTTTGATCAA TGTTCATCAT CTAAAGAGGA GAGACCGCGA GACGAGTTGC 
100
TTGGCCTCTC TAGCCTTTAC AATGGTCATC TTCATCAACA TCAACACCAT 
150
AACAATGTCT TATCTTCTGA TCATCATGCT TTCTTGCTCC CTGATATGTT 
200
CCCATTTGGT GCAATGCCGG GAGGAAATCT TCCGGCCATG CTTGATTCTT 
250
GGGATCAAAG TCATCACCTC CAAGAAACGT CTTCTCTTAA GAGGAAACTA 
300
CTTGACGTGG AGAATCTATG CAAAACTAAC TCTAACTGTG ACGTCACAAG 
350
ACAAGAGCTT GCGAAATCCA AGAAAAAACA GAGGGTAAGC TCGGAAAGCA 
400
ATACAGTTGA CGAGAGCAAC ACTAATTGGG TAGATGGTCA GAGTTTAAGC 
450
AACAGTTCAG ATGATGAGAA AGCTTCGGTC ACAAGTGTTA AAGGCAAAAC 
500
TAGAGCCACC AAAGGGACAG CCACTGATCC TCAAAGCCTT TATGCTCGGA 
550
AACGAAGAGA GAAGATTAAC GAAAGGCTCA AGACACTACA AAACCTTGTG 
600
CCAAACGGGA CAAAAGTCGA TATAAGCACG ATGCTTGAAG AAGCGGTCCA 
650
TTACGTGAAG TTCTTGCAGC TTCAGATTAA GTTGTTGAGC TCGGATGATC 
700
TATGGATGTA CGCACCATTG GCTTACAACG GCCTGGACAT GGGGTTCCAT 
750
CACAACCTTT TGTCTCGGCT TATGTGA
800

>AT1G27740.1 longest ORF length:258
MDVFVDGELE SLLGMFNFDQ CSSSKEERPR DELLGLSSLY NGHLHQHQHH 
50
NNVLSSDHHA FLLPDMFPFG AMPGGNLPAM LDSWDQSHHL QETSSLKRKL 
100
LDVENLCKTN SNCDVTRQEL AKSKKKQRVS SESNTVDESN TNWVDGQSLS 
150
NSSDDEKASV TSVKGKTRAT KGTATDPQSL YARKRREKIN ERLKTLQNLV 
200
PNGTKVDIST MLEEAVHYVK FLQLQIKLLS SDDLWMYAPL AYNGLDMGFH 
250
HNLLSRLM
300