Locus |
Common name |
Short description |
AT1G29160 |
AtDof1. 5 |
Dof-type zinc finger DNA-binding family protein (.1) |
>AT1G29160.1 CDS map
>>Show genomic map

Uncut enzymes: AatII, Acc65I, AccI, AccII(FnuDII), AfeI, AflII, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, ApoI, AscI, AseI, AvaI, AvrII, BaeI, BalI, BamHI, BbsI, BbvCI, BbvI, BcgI, BciVI, BglI, BglII, BlpI, BmrI, BpmI, BsaAI, BsaBI, BsaI, BsaJI, BsaXI, BseRI, BsgI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, BspDI, BspHI, BspMI, BsrBI, BsrDI, BsrGI, BssHII, BssSI, BstAPI, BstBI, BstEII, BstF5I, BstNI, BstUI, BstXI, BstZ17I, Bsu36I, BtgI, BtrI, BtsI, Cac8I, ClaI, DraI, DraIII, DrdI, EaeI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HaeII, HaeIII, HgaI, HhaI, HinP1I, HindIII, HpaI, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MscI, MslI, MspA1I, N.BstNBI, NaeI, , NarI, NcoI, NdeI, NgoMIV, NheI, NotI, NruI, NsiI, NspI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspGI, PspOMI, PstI, PvuI, PvuII, RsaI, RsrII, SacII, SalI, SapI, SbfI, ScaI, SexAI, SfaNI, SfcI, SfiI, SfoI, SmaI, SnaBI, SpeI, SphI, SspI, StuI, StyI, SwaI, TliI, Tsp45I, Tsp509I, TspRI, Tth111I, XbaI, XcmI, XhoI, XmaI, XmnI
Name |
Recognition sequence |
Cut positions |
AccIII(BspMII)
| T|CCGGA |
305 |
AciI
| C|CGC |
288 |
AclI
| AA|CGTT |
241, 278 |
AflIII
| A|CPuPyGT |
354 |
AluI
| AG|CT |
111, 298, 382, 394, 411, 442 |
AvaII
| G|G[AT]CC |
286 |
BanI
| G|GPyPuCC |
322 |
BanII
| GPuGCPy|C |
299 |
BclI
| T|GATCA |
402 |
BfaI
| C|TAG |
413, 425 |
BsaHI
| GPu|CGPyC |
453 |
BsaWI
| [AT]|CCGG[AT] |
305, 483 |
BsiEI
| CGPuPy|CG |
327 |
BsiHKAI
| G[AT]GC[AT]|C |
299 |
BslI
| CCNNNNN|NNGG |
331 |
Bsp1286I
| G[GAT]GC[CAT]|C |
299 |
BspEI
| T|CCGGA |
305 |
BspT107I(HgiCI)
| G|G[TC][AG]CC |
322 |
BsrFI
| Pu|CCGGPy |
292, 325 |
BsrI
| ACTGGN| |
284, 391 |
BssKI
| |CCNGG |
348 |
BstYI
| Pu|GATCPy |
150 |
Cfr10I
| [AG]|CCGG[TC] |
292, 325 |
DdeI
| C|TNAG |
160, 214, 370 |
DpnI
| GA-CH3|TC |
135, 149, 178, 401 |
DpnII
| |GATC |
135, 149, 178, 401 |
Fnu4HI
| GC|NGC |
89, 384, 444 |
HincII
| GTPy|PuAC |
275 |
HinfI
| G|ANTC |
12 |
HpaII
| C|CGG |
291, 304, 324, 348, 469, 482 |
Hpy188I
| TCN|GA |
147, 152, 191, 332 |
Hpy99I
| CG[AT]CG| |
317, 330 |
HpyCH4III
| ACN|GT |
460 |
HpyCH4IV
| A|CGT |
240, 277, 352 |
HpyCH4V
| TG|CA |
197, 263 |
MboI
| |GATC |
135, 149, 178, 401 |
MseI
| T|TAA |
24, 243, 523 |
MspI
| C|CGG |
291, 304, 324, 348, 469, 482 |
MwoI
| GCNNNNN|NNGC |
126, 297, 393, 450 |
NciI
| CC|[CG]GG |
348 |
NlaIII
| CATG| |
186, 205, 473 |
NlaIV
| GGN|NCC |
322, 494 |
SacI
| GAGCT|C |
299 |
Sau3AI
| |GATC |
135, 149, 178, 401 |
Sau96I
| G|GNCC |
286 |
ScrFI
| CC|NGG |
348 |
SgrAI
| CPu|CCGGPyG |
293 |
SmlI
| C|TPyPuAG |
17 |
Taqƒ¿I
| T|CGA |
408 |
TfiI
| G|A[AT]TC |
12 |
TseI
| G|C[AT]GC |
89, 384, 444 |
Click here to view TAIR data
>AT1G29160.1 length:528
ATGGCGACCC AAGATTCTCA AGGGATTAAA CTCTTTGGCA AAACCATAAC | 50 |
ATTCAACGCC AACATCACAC AGACGATAAA AAAAGAAGAG CAGCAACAAC | 100 |
AACAACAGCC AGAGCTACAA GCAACAACAG CCGTTAGATC ACCCTCATCG | 150 |
GATCTGACGG CTGAGAAGCG TCCAGACAAG ATCATACCAT GTCCGAGATG | 200 |
CAAGAGCATG GAGACTAAGT TTTGTTACTT CAACAACTAC AACGTTAATC | 250 |
AACCAAGACA CTTCTGCAAA GGTTGTCAAC GTTACTGGAC CGCCGGTGGA | 300 |
GCTCTCCGGA ATGTTCCCGT CGGTGCCGGT CGTCGGAAGT CAAAACCTCC | 350 |
CGGACGTGTC GGTGGGTTCG CTGAGTTGCT TGGAGCTGCG ACTGGAGCTG | 400 |
TTGATCAGGT CGAGCTAGAT GCTTTGCTAG TGGAAGAGTG GAGAGCTGCT | 450 |
ACGGCGTCTC ACGGTGGTTT CCGGCATGAT TTTCCGGTGA AGAGGCTCCG | 500 |
TTGTTACACC GATGGTCAAT CTTGTTAA | 550 |
>AT1G29160.1 longest ORF length:175
MATQDSQGIK LFGKTITFNA NITQTIKKEE QQQQQQPELQ ATTAVRSPSS | 50 |
DLTAEKRPDK IIPCPRCKSM ETKFCYFNNY NVNQPRHFCK GCQRYWTAGG | 100 |
ALRNVPVGAG RRKSKPPGRV GGFAELLGAA TGAVDQVELD ALLVEEWRAA | 150 |
TASHGGFRHD FPVKRLRCYT DGQSC | 200 |
|