fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G29160 AtDof1. 5 Dof-type zinc finger DNA-binding family protein (.1)

>AT1G29160.1 CDS map

>>Show genomic map




Uncut enzymes: AatII, Acc65I, AccI, AccII(FnuDII), AfeI, AflII, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, ApoI, AscI, AseI, AvaI, AvrII, BaeI, BalI, BamHI, BbsI, BbvCI, BbvI, BcgI, BciVI, BglI, BglII, BlpI, BmrI, BpmI, BsaAI, BsaBI, BsaI, BsaJI, BsaXI, BseRI, BsgI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, BspDI, BspHI, BspMI, BsrBI, BsrDI, BsrGI, BssHII, BssSI, BstAPI, BstBI, BstEII, BstF5I, BstNI, BstUI, BstXI, BstZ17I, Bsu36I, BtgI, BtrI, BtsI, Cac8I, ClaI, DraI, DraIII, DrdI, EaeI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HaeII, HaeIII, HgaI, HhaI, HinP1I, HindIII, HpaI, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MscI, MslI, MspA1I, N.BstNBI, NaeI, , NarI, NcoI, NdeI, NgoMIV, NheI, NotI, NruI, NsiI, NspI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspGI, PspOMI, PstI, PvuI, PvuII, RsaI, RsrII, SacII, SalI, SapI, SbfI, ScaI, SexAI, SfaNI, SfcI, SfiI, SfoI, SmaI, SnaBI, SpeI, SphI, SspI, StuI, StyI, SwaI, TliI, Tsp45I, Tsp509I, TspRI, Tth111I, XbaI, XcmI, XhoI, XmaI, XmnI
Name Recognition sequence Cut positions
AccIII(BspMII) T|CCGGA 305
AciI C|CGC 288
AclI AA|CGTT 241, 278
AflIII A|CPuPyGT 354
AluI AG|CT 111, 298, 382, 394, 411, 442
AvaII G|G[AT]CC 286
BanI G|GPyPuCC 322
BanII GPuGCPy|C 299
BclI T|GATCA 402
BfaI C|TAG 413, 425
BsaHI GPu|CGPyC 453
BsaWI [AT]|CCGG[AT] 305, 483
BsiEI CGPuPy|CG 327
BsiHKAI G[AT]GC[AT]|C 299
BslI CCNNNNN|NNGG 331
Bsp1286I G[GAT]GC[CAT]|C 299
BspEI T|CCGGA 305
BspT107I(HgiCI) G|G[TC][AG]CC 322
BsrFI Pu|CCGGPy 292, 325
BsrI ACTGGN| 284, 391
BssKI |CCNGG 348
BstYI Pu|GATCPy 150
Cfr10I [AG]|CCGG[TC] 292, 325
DdeI C|TNAG 160, 214, 370
DpnI GA-CH3|TC 135, 149, 178, 401
DpnII |GATC 135, 149, 178, 401
Fnu4HI GC|NGC 89, 384, 444
HincII GTPy|PuAC 275
HinfI G|ANTC 12
HpaII C|CGG 291, 304, 324, 348, 469, 482
Hpy188I TCN|GA 147, 152, 191, 332
Hpy99I CG[AT]CG| 317, 330
HpyCH4III ACN|GT 460
HpyCH4IV A|CGT 240, 277, 352
HpyCH4V TG|CA 197, 263
MboI |GATC 135, 149, 178, 401
MseI T|TAA 24, 243, 523
MspI C|CGG 291, 304, 324, 348, 469, 482
MwoI GCNNNNN|NNGC 126, 297, 393, 450
NciI CC|[CG]GG 348
NlaIII CATG| 186, 205, 473
NlaIV GGN|NCC 322, 494
SacI GAGCT|C 299
Sau3AI |GATC 135, 149, 178, 401
Sau96I G|GNCC 286
ScrFI CC|NGG 348
SgrAI CPu|CCGGPyG 293
SmlI C|TPyPuAG 17
Taqƒ¿I T|CGA 408
TfiI G|A[AT]TC 12
TseI G|C[AT]GC 89, 384, 444


Click here to view TAIR data

>AT1G29160.1 length:528
ATGGCGACCC AAGATTCTCA AGGGATTAAA CTCTTTGGCA AAACCATAAC 
50
ATTCAACGCC AACATCACAC AGACGATAAA AAAAGAAGAG CAGCAACAAC 
100
AACAACAGCC AGAGCTACAA GCAACAACAG CCGTTAGATC ACCCTCATCG 
150
GATCTGACGG CTGAGAAGCG TCCAGACAAG ATCATACCAT GTCCGAGATG 
200
CAAGAGCATG GAGACTAAGT TTTGTTACTT CAACAACTAC AACGTTAATC 
250
AACCAAGACA CTTCTGCAAA GGTTGTCAAC GTTACTGGAC CGCCGGTGGA 
300
GCTCTCCGGA ATGTTCCCGT CGGTGCCGGT CGTCGGAAGT CAAAACCTCC 
350
CGGACGTGTC GGTGGGTTCG CTGAGTTGCT TGGAGCTGCG ACTGGAGCTG 
400
TTGATCAGGT CGAGCTAGAT GCTTTGCTAG TGGAAGAGTG GAGAGCTGCT 
450
ACGGCGTCTC ACGGTGGTTT CCGGCATGAT TTTCCGGTGA AGAGGCTCCG 
500
TTGTTACACC GATGGTCAAT CTTGTTAA
550

>AT1G29160.1 longest ORF length:175
MATQDSQGIK LFGKTITFNA NITQTIKKEE QQQQQQPELQ ATTAVRSPSS 
50
DLTAEKRPDK IIPCPRCKSM ETKFCYFNNY NVNQPRHFCK GCQRYWTAGG 
100
ALRNVPVGAG RRKSKPPGRV GGFAELLGAA TGAVDQVELD ALLVEEWRAA 
150
TASHGGFRHD FPVKRLRCYT DGQSC
200