fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G29160 AtDof1. 5 Dof-type zinc finger DNA-binding family protein (.1)

>AT1G29160.1 genomic map

>>Show CDS map




Uncut enzymes: AatII, AfeI, AflII, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AvrII, BaeI, BamHI, BbsI, BbvCI, BbvI, BcgI, BciVI, BglI, BlpI, BmrI, BpmI, BsaBI, BsaI, BsaXI, BseRI, BsgI, BsmAI, BsmBI, BsmFI, BspMI, BsrBI, BsrGI, BssHII, BstAPI, BstEII, BstNI, BstXI, Bsu36I, BtrI, BtsI, DraIII, DrdI, EagI, EarI, EciI, EcoRI, FauI, FokI, FseI, FspI, HaeII, HgaI, HindIII, HphI, I-CeuI, I-SceI, KasI, MboII, MluI, MlyI, MnlI, NaeI, , NarI, NgoMIV, NotI, NruI, PI-PspI, PI-SceI(VDE), PflFI, PflMI, PleI, PmeI, PmlI, PspGI, PspOMI, PstI, PvuI, RsrII, SacII, SapI, SbfI, SexAI, SfaNI, SfiI, SfoI, SmaI, StuI, SwaI, Tth111I, XbaI, XmaI, XmnI
Name Recognition sequence Cut positions
Acc65I G|GTACC 1355, 5967
AccI GT|[AC][TG]AC 189, 1215, 1254, 5862
AccII(FnuDII) CG|CG 2418
AccIII(BspMII) T|CCGGA 204, 4305
AciI C|CGC 3441, 4288
AclI AA|CGTT 4241, 4278, 5308
AflIII A|CPuPyGT 701, 855, 4354
AgeI A|CCGGT 3018
AluI AG|CT 115, 510, 1191, 2641, 2837, 3398, 3695, 4111, 4298, 4382, 4394, 4411, 4442, 4723, 4759, 4911, 5027, 5347, 5360, 5950, 6002
ApoI Pu|AATTPy 163, 309, 529, 1206, 1389, 1862, 1958, 2247, 2335, 2469, 3141, 3248, 3335, 3474, 3512, 3522, 4616, 4663, 5320, 5498, 5976
AseI AT|TAAT 69, 432, 1031, 1808, 2190, 3346, 4685, 4813
AvaI C|PyCGPuG 304
AvaII G|G[AT]CC 1667, 4286, 5467
BalI TGG|CCA 136, 1093, 2611
BanI G|GPyPuCC 1355, 4322, 5967
BanII GPuGCPy|C 4299
BclI T|GATCA 64, 1618, 4402
BfaI C|TAG 252, 806, 1608, 1726, 1732, 2630, 3028, 3507, 4413, 4425, 4652, 4669, 4965, 5070, 5353
BglII A|GATCT 367, 1934
BsaAI PyAC|GTPu 1218, 1517, 3265, 4644, 4933
BsaHI GPu|CGPyC 4453
BsaJI C|CNNGG 48, 1585, 1664, 4770, 5963
BsaWI [AT]|CCGG[AT] 204, 3018, 4305, 4483, 5846
BsiEI CGPuPy|CG 4327
BsiHKAI G[AT]GC[AT]|C 4299
BsiWI C|GTACG 1515
BslI CCNNNNN|NNGG 684, 4331
BsmI GAATGCN| 3727
BsoBI C|PyCGPuG 304
Bsp1286I G[GAT]GC[CAT]|C 4299
BspDI AT|CGAT 1418, 3712
BspEI T|CCGGA 204, 4305
BspHI T|CATGA 2052, 2356
BspT107I(HgiCI) G|G[TC][AG]CC 1355, 4322, 5967
BsrDI GCAATGNN| 817, 5886
BsrFI Pu|CCGGPy 3018, 4292, 4325
BsrI ACTGGN| 2372, 2993, 3006, 4284, 4391
BssKI |CCNGG 4348
BssSI C|TCGTG 4763
BstBI TT|CGAA 849, 2560, 5931
BstF5I GGATGNN| 1202, 2590, 3127, 5265, 5538
BstUI CG|CG 2418
BstYI Pu|GATCPy 367, 1934, 4150
BstZ17I GTA|TAC 1254
BtgI C|CPuPyGG 1664, 4770
Cac8I GCN|NGC 811, 1043, 4653
Cfr10I [AG]|CCGG[TC] 3018, 4292, 4325
ClaI AT|CGAT 1418, 3712
DdeI C|TNAG 283, 660, 2835, 4160, 4214, 4370, 5444, 5593, 5824, 5996
DpnI GA-CH3|TC 63, 345, 366, 859, 1300, 1617, 1921, 1933, 2291, 2645, 3197, 3709, 4135, 4149, 4178, 4401, 5676, 5958
DpnII |GATC 63, 345, 366, 859, 1300, 1617, 1921, 1933, 2291, 2645, 3197, 3709, 4135, 4149, 4178, 4401, 5676, 5958
DraI TTT|AAA 91, 272, 1309, 1531, 2034, 2952, 3144, 3306, 3558, 3599, 5299
EaeI Py|GGCCPu 136, 1093, 2611, 4767
EcoNI CCTNN|NNNAGG 684
EcoO109I PuG|GNCCPy 5468
EcoRV GAT|ATC 83, 5762
Fnu4HI GC|NGC 2730, 4089, 4384, 4444, 5376
HaeIII GG|CC 135, 1092, 2610, 4766
HhaI GCG|C 2419
HinP1I G|CGC 2419
HincII GTPy|PuAC 3101, 3287, 4275, 4806, 5292, 5580, 5862
HinfI G|ANTC 200, 361, 1146, 2389, 2480, 2770, 4012, 5751, 5797
HpaI GTT|AAC 5292
HpaII C|CGG 203, 3017, 4291, 4304, 4324, 4348, 4469, 4482, 5845
Hpy188I TCN|GA 49, 364, 534, 1149, 1771, 1897, 3233, 4147, 4152, 4191, 4332, 5494, 5708, 5995
Hpy99I CG[AT]CG| 4317, 4330, 5863
HpyCH4III ACN|GT 8, 185, 3104, 3283, 3430, 3579, 3626, 4460, 4797, 5087, 5268, 5365
HpyCH4IV A|CGT 105, 893, 1217, 1256, 1512, 1516, 2314, 3264, 3900, 4240, 4277, 4352, 4606, 4643, 4932, 5307
HpyCH4V TG|CA 795, 1040, 1044, 1169, 1182, 1630, 1738, 2010, 3078, 3727, 3923, 4197, 4263, 5430, 5607, 5881, 5971
KpnI GGTAC|C 1355, 5967
MboI |GATC 63, 345, 366, 859, 1300, 1617, 1921, 1933, 2291, 2645, 3197, 3709, 4135, 4149, 4178, 4401, 5676, 5958
MfeI C|AATTG 1137, 1877, 5001
MscI TGG|CCA 136, 1093, 2611
MseI T|TAA 68, 90, 271, 431, 450, 462, 565, 896, 976, 1030, 1061, 1068, 1079, 1102, 1275, 1286, 1291, 1308, 1318, 1484, 1503, 1525, 1530, 1542, 1562, 1707, 1807, 1937, 1965, 1999, 2016, 2033, 2189, 2207, 2243, 2471, 2534, 2666, 2760, 2785, 2819, 2946, 2951, 3049, 3143, 3201, 3242, 3305, 3326, 3345, 3349, 3408, 3557, 3569, 3598, 3774, 3933, 3951, 3996, 4024, 4243, 4523, 4586, 4612, 4665, 4673, 4684, 4699, 4735, 4812, 4924, 4944, 4969, 5010, 5204, 5211, 5291, 5298, 5312, 5549, 5637
MslI CAPyNN|NNPuTG 1048, 3998, 5052, 5259, 5287
MspA1I C[AC]G|C[GT]G 2838, 3696, 4724
MspI C|CGG 203, 3017, 4291, 4304, 4324, 4348, 4469, 4482, 5845
MwoI GCNNNNN|NNGC 1190, 4126, 4297, 4393, 4450
N.BstNBI GAGTCNNNN|N 366, 5756
NciI CC|[CG]GG 4348
NcoI C|CATGG 1664
NdeI CA|TATG 2882
NheI G|CTAGC 4653
NlaIII CATG| 138, 257, 700, 722, 766, 854, 946, 960, 1038, 1042, 1409, 1552, 1663, 1670, 2051, 2355, 2452, 2661, 2980, 3536, 4186, 4205, 4473, 5437, 5663, 5830, 5875, 6015
NlaIV GGN|NCC 21, 1355, 4322, 4494, 5467, 5967
NsiI ATGCA|T 796, 1041, 1170
NspI PuCATG|Py 701, 723, 855, 1039, 1553
PacI TTAAT|TAA 3349
PaeR7I C|TCGAG 304
PciI A|CATGT 701, 855
PpuMI PuG|G[AT]CCPy 5468
PshAI GACNN|NNGTC 4962
PsiI TTA|TAA 520, 791, 2131, 2172, 2401, 3495, 5502
PvuII CAG|CTG 2838, 3696, 4724
RsaI GT|AC 355, 687, 833, 1354, 1514, 1652, 2061, 3628, 4645, 4841, 4930, 5966
SacI GAGCT|C 4299
SalI G|TCGAC 5862
Sau3AI |GATC 63, 345, 366, 859, 1300, 1617, 1921, 1933, 2291, 2645, 3197, 3709, 4135, 4149, 4178, 4401, 5676, 5958
Sau96I G|GNCC 1667, 4286, 5467
ScaI AGT|ACT 834, 4842
ScrFI CC|NGG 4348
SfcI C|TPuPyAG 2257, 2959, 4883, 5270
SgrAI CPu|CCGGPyG 4293
SmlI C|TPyPuAG 304, 4017
SnaBI TAC|GTA 1218, 3265, 4644, 4933
SpeI A|CTAGT 4670
SphI GCATG|C 1043
SspI AAT|ATT 267, 1154, 1540, 1811, 1970, 2241, 2936, 3240, 3312, 3778, 5114, 5220
StyI C|C[AT][AT]GG 1585, 1664, 5963
Taqƒ¿I T|CGA 303, 848, 1298, 1417, 2559, 3011, 3354, 3711, 4408, 5861, 5891, 5930, 5984, 6020
TfiI G|A[AT]TC 200, 1146, 2389, 2480, 2770, 4012, 5797
TliI C|TCGAG 304
TseI G|C[AT]GC 4089, 4384, 4444, 5376
Tsp45I |GT[CG]AC 615, 1052, 5278
Tsp509I |AATT 119, 162, 308, 328, 408, 429, 433, 528, 695, 865, 974, 1028, 1070, 1081, 1136, 1205, 1277, 1388, 1527, 1627, 1636, 1648, 1785, 1793, 1805, 1861, 1876, 1957, 1963, 1985, 2079, 2104, 2191, 2246, 2334, 2413, 2468, 2634, 2668, 2810, 2896, 2948, 3052, 3140, 3180, 3203, 3247, 3334, 3343, 3347, 3410, 3447, 3473, 3491, 3511, 3521, 3542, 4525, 4583, 4615, 4662, 4675, 4682, 4686, 4737, 4753, 4814, 4846, 5000, 5103, 5319, 5475, 5497, 5704, 5975
TspRI NNCA[CG]TGNN| 3006, 3257, 3284, 3431, 3580, 3923
XcmI CCANNNNN|NNNNTGG 5885
XhoI C|TCGAG 304


Click here to view TAIR data

>AT1G29160 genomic sequence (4001-4528,) length:6027
ccttttttac tgtggaatat ggaaccatta gtattgaaag ttgtaagcct 
50
cggaaagaaa ctttgatcat taatatcaat atgatatcct tttaaaccct 
100
aaccatacgt ttatagagct aatttacatt ttatgtggcc atgtgagata 
150
acaaactaaa tcaaatttgt atttttggac gatatacggt agacgagttt 
200
gaatccggat agtgagttac atacgatatt agtatgaact atatatatat 
250
gttctagtca tgctctaata ttttaaaata tatctaagtt atatatgagc 
300
atactcgaga atttcaaata taaatatata atttcatcct acataagatc 
350
aagaaagtac agagtcagat ctctataaga ctataataga tatgaaagag 
400
aaaaataata atttatttct ttattcttct aattaatttc aaatcacttt 
450
attaaagata ggattaaaga acaaaaccca tataaaagac tttgctttcc 
500
tttgtaaaga gagctttttt tataaagtga attttcagaa cccaaaagaa 
550
gcacatactg aaaagtttaa gatttgaaag gagaaaagaa aaaaatgggc 
600
aaccaacaaa agttagtcac caaatccatt gaaaccctaa agaaagaaga 
650
aaaaaatagc ctaagaaaag ataatccacc tttacaaggt acaactaatt 
700
acatgtgtct atatatatac aagcatgtta tagtttatac atatacagag 
750
tataaatcta tgcggaacat gactaaacct tcctttgttt ttataatgca 
800
tatttgtcta gcacgcaatg tataatatgt attagtactc cgtatatatt 
850
cgaaacatgt gatctcaatt ctaaaatgaa gaagtatcta caatacgtta 
900
ataaatccca cattgtattg ccactacaca aacccgtatt atattgacat 
950
gatttttctt acatgattat agaaaaatta aagcagttgc gttgtattac 
1000
caaaagttgt cgtataacct acctgttaca attaatatac atgcatgcag 
1050
atgtgaccat tcttaaatct taattgtctt ttaattttga tttggccata 
1100
aacttaaatc taatcacctt tagaggaata tgaatacaat tgtttagaat 
1150
ctgaatattt tatctttata tgcatatata ctttgcaaaa atagctcaat 
1200
ggatgaaatt ctttgtctac gtaaatatat acgcacattt atattccctt 
1250
tttgtatacg tctattacat tcatctttaa tttatattta acttaaaagt 
1300
cgatctcttt taaaagtgct taaaagttgt tcttttgcga ctatatagta 
1350
taaaggtacc aatgagaaaa catttagtat aaaagcacga atttgagaaa 
1400
aaaagagaaa catgaacatc gattagtgct ttcctttttc ttttactttc 
1450
ttttcctctt gttttttttt tcctttccct catctttaac acttgcttta 
1500
gtgtttaata ataacgtacg tgaaagttaa tttaaacaaa atattaaaag 
1550
aaacatgctt tgcttaactt tatgtgtttc ttctccaagg taatatccac 
1600
tcaaccattc tagtagttga tcaagcaaaa ttgcacaaat tattagtcta 
1650
attgtaccac tatccatgga ccatgactga taagaaggga tagatgttcc 
1700
attttggttt aacatagtgt tgtccaacta gaactagatt gcacatatac 
1750
tattattaga agttcttttt ttcggattga aaaaccaatt ccaaaattat 
1800
tttctaaatt aatattttgg ctgacaaaaa aaacctcaaa acataacaag 
1850
catcaaaatc caaattcttg tttccacaat tggtttctct ccatcaatca 
1900
gatgtttcat cccaacataa atgatccctt gtaagatctt aaaaaacttt 
1950
gaaaaataaa ttcaaattaa atatttattc cgttcaaatt atacgatttt 
2000
ttaactaaaa atgcagatta agaagtatct ttttttaaaa ggttcatcca 
2050
atcatgaaaa aggtacggca taatcaaaat aattagaaaa tatgaaataa 
2100
tatataattt gtataaaaac ttgaaaacat ttataatata aaacaaacaa 
2150
gttttcccaa aacatcttct attataaaac gaagatggta ttaatttttt 
2200
atttttcttt aagttttatt gtagttatga acacaaatct aatattaaat 
2250
ttttttctat agtttcattg tcgtctcaat aataaaacat tagatcattc 
2300
acttcaatat atatgacgta aacctttgaa tataaaattt acacacccca 
2350
taaaatcatg aaatgtaatc tactggtttg tgaaaatatg aatccaactc 
2400
ttataaaaga aaaaaattac gcgccttatc aaaacattat tgtttttttt 
2450
tgtcatgttt actgacataa atttaatgta gattcaactc tgcttatatt 
2500
attttatata agaaaacaaa actctactaa tactattaaa taaaaaggga 
2550
ctatatttat tcgaaataaa taaagaaatg aagaaaatgg atggatgact 
2600
tggaaaagag tggccaaaag atgatgtgag cctagaattg aaagctgatc 
2650
cctctactca ttcatgctta attatgctta ttcatctctt ctccttttct 
2700
acgcaacaca ccaaaaacgc tctctctttg gcggctttgt ccaaatccaa 
2750
atcattctca cttaaataaa gattcattga aatatattaa ggagatacac 
2800
ataaaataga aaattatatg ttaatagttg tggttctcag ctgatagaaa 
2850
catcatttac tttttcaatc gcataagttt ccatatgttt ttttcctaat 
2900
ttctatatta tttatacatt ttggagattt tgataaatat tttttgttta 
2950
atttaaacct atagacctca catattcatc tcatgttgaa gaactgggtc 
3000
aaagcactgg ggtcgaaacc ggtagtaaac tagaaatgag agttacctac 
3050
ttaaattgct ctcctcatat ttccaaagat gcaatcatcc aaaaatgtta 
3100
gtcaacggtg aaaacaaaaa gaaatggatg atgcttatgc gaatttaaaa 
3150
ggaaataata gttatattat atggataata taattaggtt ttgaatgtga 
3200
tcttaatttt gttttgtgat acacagcccc agttcagaaa atattaagaa 
3250
tttgccactg aacatacgta tcccttccaa atcactgttg acatactaac 
3300
atcattttaa aaatattcaa taatatctta atataaattt tatgaattaa 
3350
ttaaatcgaa caaagccttt ttttacccaa gataaacaaa catttggata 
3400
gcttgtaagt taattatagt agttttaggc actgtaagta tcccgcataa 
3450
ttcatatatt attagtgatt tggaaattta gcaaagggag taaattataa 
3500
aaaaaaaact agaatttaca caaattttga taaaagtcat gtcaattttt 
3550
tatttttttt aaaggagatg ttaaacatca ctgttcctaa aaaaactttt 
3600
taaaatatac ggaaagacaa tggagaactg taccaaaata cacacatttt 
3650
ggagaaaagg aaaaaaaaaa aagcaaaaga acacacacat tttgtcagct 
3700
gatatatatg gatcgatatt tctttgaatg caataagcaa taaatgtgcc 
3750
taacatattc tttcattatt tttttttaat attctcccta ctaacactat 
3800
tgcttttctc tcctttctta cgataaagat ataataatgt tttcacaaaa 
3850
tctttttaca aaaagaaaag aaaaaaacac attgaaatct tcttcctata 
3900
aacgtctctt ctctctttca tcactgcaag aaacttaatc acaactctct 
3950
ctttaatctc tttgtctctc tctctctctc tctatctctc tctcatttta 
4000
ATGGCGACCC AAGATTCTCA AGGGATTAAA CTCTTTGGCA AAACCATAAC 
4050
ATTCAACGCC AACATCACAC AGACGATAAA AAAAGAAGAG CAGCAACAAC 
4100
AACAACAGCC AGAGCTACAA GCAACAACAG CCGTTAGATC ACCCTCATCG 
4150
GATCTGACGG CTGAGAAGCG TCCAGACAAG ATCATACCAT GTCCGAGATG 
4200
CAAGAGCATG GAGACTAAGT TTTGTTACTT CAACAACTAC AACGTTAATC 
4250
AACCAAGACA CTTCTGCAAA GGTTGTCAAC GTTACTGGAC CGCCGGTGGA 
4300
GCTCTCCGGA ATGTTCCCGT CGGTGCCGGT CGTCGGAAGT CAAAACCTCC 
4350
CGGACGTGTC GGTGGGTTCG CTGAGTTGCT TGGAGCTGCG ACTGGAGCTG 
4400
TTGATCAGGT CGAGCTAGAT GCTTTGCTAG TGGAAGAGTG GAGAGCTGCT 
4450
ACGGCGTCTC ACGGTGGTTT CCGGCATGAT TTTCCGGTGA AGAGGCTCCG 
4500
TTGTTACACC GATGGTCAAT CTTGTTAAtt atttttacat ttttatttgt 
4550
ttgttttcgg gtttgggttt gggtggtttg ctataattta acccgtagaa 
4600
agaaagaacg tggttaaatt tgctttgctt tgattactct ggatacgtac 
4650
aggctagcaa caaaatttaa ctagttaatt actaattaat tagtaggttt 
4700
ttaatacttg cttatctact aaacagctgt tgctttttaa tttctcttgc 
4750
tgtaaattga agctcgtggc cgtgggattt ttcttctcta aacaaagacg 
4800
gtgtggttga ccattaatta tccttgaaac tatttattag tagtactaat 
4850
ttttttagtt attattgctc aatctcataa acctatagaa atctaacttt 
4900
tttggtcttt gtagcttcgc atcgtttaag tgtacgtaaa gttagttaaa 
4950
gattatggac attagtctag ttaatctttc aaccaagaag aaacctcatt 
5000
caattggaca tttaagtttt cacttttcag ctataaactg acaatcacac 
5050
aataatggga tacctacata actagaataa ggtttttact gtttatgaag 
5100
aagaaattga acaaatattg gaacactcta aatgtttgtc cttccaataa 
5150
aagaccagta aaccactaat gataaataac cttttcaaac agccaaaaaa 
5200
atgtcttaaa tcttaacgaa atattatgat ttgtgaaaat atatgcctta 
5250
tcaacatttt tgtggatgac tgtagtatgt cacattttag tgttaacatt 
5300
taaaataaac gttttaacag aatttgttta cttcatcaat aatcacgaag 
5350
ctaactagaa aagctactgt gatgaagcag cacataaaag aatatgacag 
5400
aagaagagaa caaaatcaag acttgcttgt gtgcaagtca tgtcctgagt 
5450
tgagaaaaga aatggtgggt cctgtgaatt gagttctggg ttggtcagaa 
5500
tttataaatg cggagataga aaaatcaatg agatttggat gaggtaaaga 
5550
ttaaaggttt tggaaaaaga gaacacaatg ttgacttgcg aggctaagaa 
5600
aaagaaactg caacaaccag atgaaaacaa actacatttt aagcactaat 
5650
aaaaggtaag aaaccatgac ataataagat cataagcaaa acgagtaatg 
5700
tgaacaattc agacaagttt actttctcca ttgagaaaca tcagtttctt 
5750
tgagtccaaa cgatatctaa aaccagaaag aaagaacgat agaatgagat 
5800
tcatacgacc aactcactca ctctcTCAGG ACATGATTTT GGCAGACCGG 
5850
ACATAAAGGC TGTCGACGAC CTTCCCCATG TTTGCAATGG TTTCGAGGGT 
5900
AGCCGAGTAG ATAGCATCTG CCTTTGGGTC TTCGAAGATG ATGAGGCATC 
5950
CAGCTCCTTG ATCCAAGGTA CCTGCAAATT TCTTGTCGAG TATCATCTGA 
6000
GATAGCTTCT TTTCCACATG GTCGAGC
6050