fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G29560 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2)

>AT1G29560.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, EcoRI, HindIII, HpaI, KpnI, NcoI, NdeI, NotI, PacI, PvuII, SacI, SalI, SmaI, XhoI
Name Recognition sequence Cut positions
BglII A|GATCT 418, 562
EcoRV GAT|ATC 48
NheI G|CTAGC 1318, 1570
PstI CTGCA|G 1051, 1135
SpeI A|CTAGT 934, 1260, 1512
StyI C|C[AT][AT]GG 603
XbaI T|CTAGA 981


Click here to view TAIR data

>AT1G29560.1 length:1719
ATGGCAGACG CTGGAGATAA TCAGAGAAGA AGCGATGAAA AAGAGTCGAT 
50
ATCAACTGAA GAAACGAAGG AGAATGAAGA CTTGGGATCT GGAAGAAACG 
100
ACACAGGTCA TCATGTATAC AACGAGGGAC ACGAAGAGGT ACTAGAGTAT 
150
CTGAAACAAG AGAGACTGAA AGATGCTGAT ATGCAGAGGA AAAGGCATGA 
200
AACAGAGTCG AAATCCATTG AGGGCACAAC TCCTGATATT AGGCTGAGTG 
250
ATTCAGGGAA AGGGTCTGAT GAAATACAGA AAGCAGACTC AGTTTACAAA 
300
CGCTCTAACG CTGACACGCG AGTGAGTCTG CCACAACAGA GACGACTGAA 
350
AGATGTGGTG GAGGCGCATA GGGTACGCCG TGAAACAGAG TCAAGATTAT 
400
GGCACCAAGA GAGGGATAGA TCTCTGGTTT GGGGAGGAAG TGAACCCAGG 
450
ATGAGATTTG ATGAAAGTAC TCAGGGTTGG AGAGATAGTG ACTATGAATC 
500
CAAATGGAGG TTTCATGAGA GAACTCCGGA TTGGGATTGG AGAGATAGTG 
550
AATCCAGAAT GAGATCTCAT GAAAGAACTC AGGATAGGAG AGGAAGTGAA 
600
TCCCAAGGGG TATTTGATGA GAGAACAGAG AGGAGACAAG AACCAGTGCG 
650
ATGGCCCGGT GAAGAGTGTT GGTGTCTGCG GTGTCGAAAC GGAGGAAGTT 
700
GCCGTTACAA TCATCCTACT CAACTTCCAC AGGAGCTTCC GGTGAGGAAT 
750
CGTTTGCAGA TTTGCAGGTA TTTTCTGAGG GGATATTGTA AGTTCGGCTC 
800
AGTTTGTGGA TTTCAACACA TAAGGGACAG GGATGTTGCA GAACCTATGT 
850
ATGAGAATTG GAGTTTTGAT GTGAGAACTC AGAGGAGATA TGAAATAGAG 
900
TACTCAGGAT TCAGGCCAGA GAAGAGGGCA AAAACTAGTC TGGATTCCGT 
950
AGAGCCTGAT TCAAGAAAAA GACTGGAAGG TCTAGAGAAT AAACGAGAGC 
1000
AAGAGAATCC GCAAGAACCT GAAAGGCAGA GGACTGAGGC TCAAGACAAT 
1050
CTGCAGGAAT TTCGAGAGCA AGAGAATCCG CAAAACCAGA TACAGATAAA 
1100
TACTGAAAGA CAGAGGACAA TGGCTCATGA CAATCTGCAG ATCGTTTCGG 
1150
ATTCTCGAAT GCATGATCCA AGACGCCATG ATACAGAGTT GAGACTCGAA 
1200
CGAGAGAAGA TGGTAAACAG AGAACTTGAA AAGCAGAGGA TAGAACATCT 
1250
AATCGATCCA CTAGTGAGGC GATACATGCA AGCAAAGAGA GATAAAGAAG 
1300
TTGAACAGAG AGAGAGAGCT AGCATTGAGA GCCAGAGGAT AGTGGCTCAA 
1350
GAGATTCTGC GGCAACAGAG ATTACAGGGG ATGCGAGAGA ATCAGAACGT 
1400
GGATTCTCGA ATGCATGATC CAAGACGCCA TGATACAGAG TTGAGACTCG 
1450
AACGAGAGAA GATGGTAAAC AGAGAACTTG AAAAGCAGAG GATAGAACCT 
1500
CTAATCGGTC CACTAGTGAG GCGATACATG CAAGCAAAGA GAGATAAAGA 
1550
AGTTGAACAG AGAGAGAGAG CTAGCATTGA GAGCCAGAGG ATAGTGGCTC 
1600
AAGAGAATCT GCGACAACAG AGATTGCAGG GGATGCGAGA GAATCAGAAC 
1650
GTGGATGCTC ATGATCAAGA GAAAACTCAG GAACTCGGTT TCAAAGGAAA 
1700
AGAGGGAGAT GGAGTTTAA
1750

>AT1G29560.1 longest ORF length:572
MADAGDNQRR SDEKESISTE ETKENEDLGS GRNDTGHHVY NEGHEEVLEY 
50
LKQERLKDAD MQRKRHETES KSIEGTTPDI RLSDSGKGSD EIQKADSVYK 
100
RSNADTRVSL PQQRRLKDVV EAHRVRRETE SRLWHQERDR SLVWGGSEPR 
150
MRFDESTQGW RDSDYESKWR FHERTPDWDW RDSESRMRSH ERTQDRRGSE 
200
SQGVFDERTE RRQEPVRWPG EECWCLRCRN GGSCRYNHPT QLPQELPVRN 
250
RLQICRYFLR GYCKFGSVCG FQHIRDRDVA EPMYENWSFD VRTQRRYEIE 
300
YSGFRPEKRA KTSLDSVEPD SRKRLEGLEN KREQENPQEP ERQRTEAQDN 
350
LQEFREQENP QNQIQINTER QRTMAHDNLQ IVSDSRMHDP RRHDTELRLE 
400
REKMVNRELE KQRIEHLIDP LVRRYMQAKR DKEVEQRERA SIESQRIVAQ 
450
EILRQQRLQG MRENQNVDSR MHDPRRHDTE LRLEREKMVN RELEKQRIEP 
500
LIGPLVRRYM QAKRDKEVEQ RERASIESQR IVAQENLRQQ RLQGMRENQN 
550
VDAHDQEKTQ ELGFKGKEGD GV
600