fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G29560 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2)

>AT1G29560.2 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, EcoRI, EcoRV, HindIII, HpaI, KpnI, NcoI, NdeI, NotI, PacI, PvuII, SacI, SalI, SmaI, XhoI
Name Recognition sequence Cut positions
BglII A|GATCT 112
NheI G|CTAGC 841, 1093
PstI CTGCA|G 574, 658
SpeI A|CTAGT 457, 783, 1035
StyI C|C[AT][AT]GG 153
XbaI T|CTAGA 504


Click here to view TAIR data

>AT1G29560.2 length:1242
ATGAGATTTG ATGAAAGTAC TCAGGGTTGG AGAGATAGTG ACTATGAATC 
50
CAAATGGAGG TTTCATGAGA GAACTCCGGA TTGGGATTGG AGAGATAGTG 
100
AATCCAGAAT GAGATCTCAT GAAAGAACTC AGGATAGGAG AGGAAGTGAA 
150
TCCCAAGGGG TATTTGATGA GAGAACAGAG AGGAGACAAG AACCAGTGCG 
200
ATGGCCCGGT GAAGAGTGTT GGTGTCTGCG GTGTCGAAAC GGAGGAAGTT 
250
GCCGTTACAA TCATCCTACT CAACTTCCAC AGATTTGCAG GTATTTTCTG 
300
AGGGGATATT GTAAGTTCGG CTCAGTTTGT GGATTTCAAC ACATAAGGGA 
350
CAGGGATGTT GCAGAACCTA TGTATGAGAA TTGGAGTTTT GATGTGAGAA 
400
CTCAGAGGAG ATATGAAATA GAGTACTCAG GATTCAGGCC AGAGAAGAGG 
450
GCAAAAACTA GTCTGGATTC CGTAGAGCCT GATTCAAGAA AAAGACTGGA 
500
AGGTCTAGAG AATAAACGAG AGCAAGAGAA TCCGCAAGAA CCTGAAAGGC 
550
AGAGGACTGA GGCTCAAGAC AATCTGCAGG AATTTCGAGA GCAAGAGAAT 
600
CCGCAAAACC AGATACAGAT AAATACTGAA AGACAGAGGA CAATGGCTCA 
650
TGACAATCTG CAGATCGTTT CGGATTCTCG AATGCATGAT CCAAGACGCC 
700
ATGATACAGA GTTGAGACTC GAACGAGAGA AGATGGTAAA CAGAGAACTT 
750
GAAAAGCAGA GGATAGAACA TCTAATCGAT CCACTAGTGA GGCGATACAT 
800
GCAAGCAAAG AGAGATAAAG AAGTTGAACA GAGAGAGAGA GCTAGCATTG 
850
AGAGCCAGAG GATAGTGGCT CAAGAGATTC TGCGGCAACA GAGATTACAG 
900
GGGATGCGAG AGAATCAGAA CGTGGATTCT CGAATGCATG ATCCAAGACG 
950
CCATGATACA GAGTTGAGAC TCGAACGAGA GAAGATGGTA AACAGAGAAC 
1000
TTGAAAAGCA GAGGATAGAA CCTCTAATCG GTCCACTAGT GAGGCGATAC 
1050
ATGCAAGCAA AGAGAGATAA AGAAGTTGAA CAGAGAGAGA GAGCTAGCAT 
1100
TGAGAGCCAG AGGATAGTGG CTCAAGAGAA TCTGCGACAA CAGAGATTGC 
1150
AGGGGATGCG AGAGAATCAG AACGTGGATG CTCATGATCA AGAGAAAACT 
1200
CAGGAACTCG GTTTCAAAGG AAAAGAGGGA GATGGAGTTT AA
1250

>AT1G29560.2 longest ORF length:413
MRFDESTQGW RDSDYESKWR FHERTPDWDW RDSESRMRSH ERTQDRRGSE 
50
SQGVFDERTE RRQEPVRWPG EECWCLRCRN GGSCRYNHPT QLPQICRYFL 
100
RGYCKFGSVC GFQHIRDRDV AEPMYENWSF DVRTQRRYEI EYSGFRPEKR 
150
AKTSLDSVEP DSRKRLEGLE NKREQENPQE PERQRTEAQD NLQEFREQEN 
200
PQNQIQINTE RQRTMAHDNL QIVSDSRMHD PRRHDTELRL EREKMVNREL 
250
EKQRIEHLID PLVRRYMQAK RDKEVEQRER ASIESQRIVA QEILRQQRLQ 
300
GMRENQNVDS RMHDPRRHDT ELRLEREKMV NRELEKQRIE PLIGPLVRRY 
350
MQAKRDKEVE QRERASIESQ RIVAQENLRQ QRLQGMRENQ NVDAHDQEKT 
400
QELGFKGKEG DGV
450