fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G31320 LBD4 LOB domain-containing protein 4 (.1)

>AT1G31320.1 CDS map

>>Show genomic map




Uncut enzymes: AatII, Acc65I, AccII(FnuDII), AccIII(BspMII), AciI, AclI, AfeI, AflII, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AseI, AvaI, AvaII, AvrII, BaeI, BalI, BanI, BanII, BbsI, BbvCI, BbvI, BcgI, BciVI, BclI, BglI, BglII, BmrI, BpmI, BsaBI, BsaHI, BsaI, BsaXI, BseRI, BsgI, BsiHKAI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, BspDI, BspEI, BspHI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrFI, BsrGI, BsrI, BssHII, BssSI, BstAPI, BstUI, BstXI, BstZ17I, Bsu36I, BtgI, BtrI, BtsI, Cfr10I, ClaI, DraI, DrdI, EarI, EciI, EcoNI, EcoO109I, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HaeII, HgaI, HpaI, HphI, Hpy99I, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MscI, MseI, NaeI, , NarI, NcoI, NgoMIV, NotI, NruI, NsiI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspOMI, PstI, PvuI, PvuII, RsrII, SacI, SacII, SapI, Sau96I, SbfI, ScaI, SexAI, SfaNI, SfcI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SpeI, SphI, SspI, StuI, StyI, SwaI, TfiI, TliI, TspRI, Tth111I, XbaI, XcmI, XhoI, XmaI, XmnI
Name Recognition sequence Cut positions
AccI GT|[AC][TG]AC 360
AflIII A|CPuPyGT 348
AluI AG|CT 25, 51, 307, 312, 316, 322, 328
ApoI Pu|AATTPy 121
BamHI G|GATCC 246
BfaI C|TAG 150, 314, 320, 514
BlpI GC|TNAGC 311
BsaAI PyAC|GTPu 347
BsaJI C|CNNGG 372
BsaWI [AT]|CCGG[AT] 249
BsiEI CGPuPy|CG 104
BslI CCNNNNN|NNGG 197, 255, 378
Bsp1286I G[GAT]GC[CAT]|C 376
BssKI |CCNGG 372, 389
BstBI TT|CGAA 423
BstEII G|GTNACC 414
BstF5I GGATGNN| 481
BstNI CC|[AT]GG 372
BstYI Pu|GATCPy 246
Cac8I GCN|NGC 151, 306, 315
DdeI C|TNAG 115, 310, 331
DpnI GA-CH3|TC 245
DpnII |GATC 245
DraIII CACNNN|GTG 38
EaeI Py|GGCCPu 104
EagI C|GGCCG 104
Fnu4HI GC|NGC 27, 42, 59, 211, 406
HaeIII GG|CC 103
HhaI GCG|C 69
HinP1I G|CGC 69
HincII GTPy|PuAC 160, 360
HindIII A|AGCTT 52
HinfI G|ANTC 434, 498
HpaII C|CGG 13, 101, 248, 389
Hpy188I TCN|GA 116, 398
HpyCH4III ACN|GT 35, 256, 416
HpyCH4IV A|CGT 156, 346
HpyCH4V TG|CA 232, 303, 339
MboI |GATC 245
MslI CAPyNN|NNPuTG 347
MspA1I C[AC]G|C[GT]G 408
MspI C|CGG 13, 101, 248, 389
MwoI GCNNNNN|NNGC 59, 311, 460
N.BstNBI GAGTCNNNN|N 439, 503
NciI CC|[CG]GG 389
NdeI CA|TATG 466
NheI G|CTAGC 151, 315
NlaIII CATG| 214, 454
NlaIV GGN|NCC 246
NspI PuCATG|Py 455
PspGI |CC[AT]GG 372
RsaI GT|AC 350
SalI G|TCGAC 360
Sau3AI |GATC 245
ScrFI CC|NGG 372, 389
SmlI C|TPyPuAG 74, 326
Taqƒ¿I T|CGA 359, 422
TseI G|C[AT]GC 27, 42, 211, 406
Tsp45I |GT[CG]AC 32, 413
Tsp509I |AATT 120, 177, 271, 365


Click here to view TAIR data

>AT1G31320.1 length:519
ATGAAAGAAA GTAGCCGGAA GCAAGGAGCT GCGTCACCGT GTGCTGCGTG 
50
TAAGCTTTTG CGGCGGCGGT GCGCTCAAGA TTGCGTTTTC TCGCCGTATT 
100
TTCCGGCCGA TGAGCCTCAG AAATTTGCTA ATGTTCATAG AGTGTTCGGT 
150
GCTAGCAACG TCAACAAGAT GCTTCAGGAA TTACCAATCC ACCAGCGAGG 
200
GGACGCTGTG AGCAGCATGG TTTACGAGGC TAATGCAAGA GTGCGGGATC 
250
CGGTTTACGG TTGCGTTGGG GCAATTTCGT CCCTCCAGCA ACAGATAGAT 
300
GTGTTGCAAG CTCAGCTAGC TCTAGCTCAA GCTGAGGTGG TGCATCTACG 
350
TGTACGCCAG TCGACTAATT TCCCAGGGCA CGGACTATGC CCGGATAGTC 
400
CGAGTAGCAG CGGGTCACCG TCTTCGAAGC AAGTGAGTCC ACAGGACAAC 
450
AAGGGCATGT TTAGCCATAT GGACATTGTG GATGAAGCCA GTTTGGGAGA 
500
GTCTATGTGG TCTTGCTAG
550

>AT1G31320.1 longest ORF length:172
MKESSRKQGA ASPCAACKLL RRRCAQDCVF SPYFPADEPQ KFANVHRVFG 
50
ASNVNKMLQE LPIHQRGDAV SSMVYEANAR VRDPVYGCVG AISSLQQQID 
100
VLQAQLALAQ AEVVHLRVRQ STNFPGHGLC PDSPSSSGSP SSKQVSPQDN 
150
KGMFSHMDIV DEASLGESMW SC
200