fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G32240 KAN2, KANADI2 KANADI 2, Homeodomain-like superfamily protein (.1)

>AT1G32240.1 CDS map

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Uncut enzymes: AatII, Acc65I, AccI, AccII(FnuDII), AclI, AfeI, AflIII, AgeI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, ApoI, AscI, AseI, BaeI, BamHI, BanI, BbsI, BbvCI, BbvI, BcgI, BciVI, BclI, BglI, BmrI, BpmI, BsaAI, BsaBI, BsaHI, BsaI, BsaXI, BseRI, BsgI, BsiEI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BssHII, BssSI, BstAPI, BstBI, BstEII, BstNI, BstUI, BstXI, BstZ17I, Bsu36I, BtgI, BtrI, BtsI, DraI, DraIII, DrdI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HaeII, HgaI, HhaI, HinP1I, HincII, HindIII, HpaI, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MspA1I, N.BstNBI, , NarI, NcoI, NdeI, NheI, NlaIV, NotI, NruI, NsiI, NspI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspGI, PspOMI, PstI, PvuI, PvuII, RsrII, SacII, SalI, SapI, SbfI, ScaI, SexAI, SfaNI, SfcI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SphI, SspI, StuI, SwaI, TliI, Tsp45I, Tth111I, XhoI, XmaI
Name Recognition sequence Cut positions
AccIII(BspMII) T|CCGGA 976
AciI C|CGC 440, 446
AflII C|TTAAG 378
AhdI GACNNN|NNGTC 471
AluI AG|CT 3, 139, 287, 527, 616, 634, 735, 823, 1094
AvaI C|PyCGPuG 1110
AvaII G|G[AT]CC 652, 964
AvrII C|CTAGG 640
BalI TGG|CCA 702
BanII GPuGCPy|C 140, 635, 736, 1095
BfaI C|TAG 537, 639, 941, 1046
BglII A|GATCT 753
BlpI GC|TNAGC 17
BsaJI C|CNNGG 640, 761
BsaWI [AT]|CCGG[AT] 514, 976
BsiHKAI G[AT]GC[AT]|C 140, 635, 736, 1059, 1095
BslI CCNNNNN|NNGG 390
BsoBI C|PyCGPuG 1110
Bsp1286I G[GAT]GC[CAT]|C 140, 635, 736, 1059, 1095
BspDI AT|CGAT 1006
BspEI T|CCGGA 976
BspHI T|CATGA 108
BsrFI Pu|CCGGPy 504
BsrGI T|GTACA 791
BsrI ACTGGN| 887
BssKI |CCNGG 670
BstF5I GGATGNN| 645, 745, 891
BstYI Pu|GATCPy 753
Cac8I GCN|NGC 504
Cfr10I [AG]|CCGG[TC] 504
ClaI AT|CGAT 1006
DdeI C|TNAG 16, 878, 1036
DpnI GA-CH3|TC 84, 95, 104, 752, 858, 1155
DpnII |GATC 84, 95, 104, 752, 858, 1155
EaeI Py|GGCCPu 702
Fnu4HI GC|NGC 326, 819
HaeIII GG|CC 701
HinfI G|ANTC 147, 581, 598, 610, 935
HpaII C|CGG 503, 513, 670, 975
Hpy188I TCN|GA 317, 840, 879, 1035, 1083
Hpy99I CG[AT]CG| 469
HpyCH4III ACN|GT 52, 436, 798
HpyCH4IV A|CGT 985
HpyCH4V TG|CA 281, 990, 1015
MboI |GATC 84, 95, 104, 752, 858, 1155
MscI TGG|CCA 702
MseI T|TAA 366, 377, 531, 771, 1001
MslI CAPyNN|NNPuTG 69, 450
MspI C|CGG 503, 513, 670, 975
MwoI GCNNNNN|NNGC 1102
NaeI GCC|GGC 504
NciI CC|[CG]GG 670
NgoMIV G|CCGGC 504
NlaIII CATG| 69, 107, 450, 601, 628, 665, 704, 739, 767, 992
RsaI GT|AC 790
SacI GAGCT|C 140, 635, 736, 1095
Sau3AI |GATC 84, 95, 104, 752, 858, 1155
Sau96I G|GNCC 652, 964
ScrFI CC|NGG 670
SmlI C|TPyPuAG 378, 733, 1062, 1138
SpeI A|CTAGT 538
StyI C|C[AT][AT]GG 640, 761
Taqƒ¿I T|CGA 65, 117, 462, 894, 911, 1005, 1153
TfiI G|A[AT]TC 147, 598, 610, 935
TseI G|C[AT]GC 326, 819
Tsp509I |AATT 173, 278, 312, 557, 690, 927, 968, 1021
TspRI NNCA[CG]TGNN| 801
XbaI T|CTAGA 942
XcmI CCANNNNN|NNNNTGG 70
XmnI GAANN|NNTTC 159


Click here to view TAIR data

>AT1G32240.1 length:1167
ATGGAGCTGT TTCCTGCTCA GCCCGATTTA TCCTTACAAA TAAGTCCACC 
50
AAACAGTAAA CCATCATCGA CATGGCAGAG AAGAAGATCA ACAACAGATC 
100
AAGAAGATCA TGAAGAACTC GATTTAGGGT TTTGGAGAAG AGCTCTTGAT 
150
TCAAGAACAT CTTCTCTCGT CTCTAATTCC ACCTCAAAAA CAATCAATCA 
200
TCCATTCCAA GACCTCTCGC TCTCTAACAT CTCTCATCAT CAACAACAAC 
250
AACAACATCA TCATCCACAA CTTCTCCCTA ATTGCAACAG CTCTAACATC 
300
TTGACCTCTT TCCAATTTCC GACACAGCAG CAACAACAAC ACTTACAAGG 
350
GTTTCTTGCT CACGACCTTA ATACTCACTT AAGACCAATA AGAGGAATAC 
400
CACTTTACCA CAACCCTCCT CCACATCATC ATCCTCACCG TCCGCCACCG 
450
CCATGTTTCC CTTTCGACCC GTCGTCTCTA ATACCCTCTT CCTCCACTTC 
500
CTCGCCGGCT CTAACCGGAA ACAACAATAG CTTTAATACT AGTAGCGTTA 
550
GTAACCCTAA TTACCACAAT CATCATCACC AGACTCTAAA CAGAGCCAGA 
600
TTCATGCCAA GATTCCCAGC TAAACGAAGC ATGAGAGCTC CTAGGATGCG 
650
ATGGACCACC ACTCTTCATG CCCGGTTCGT TCACGCCGTT GAATTACTCG 
700
GTGGCCATGA AAGAGCAACA CCTAAATCAG TTCTTGAGCT CATGGATGTC 
750
AAAGATCTAA CCTTGGCTCA TGTTAAGTCC CATTTACAGA TGTACAGAAC 
800
AGTGAAGACA ACCGACAAAG CAGCAGCTTC GTCAGGACAA TCTGATGTCT 
850
ATGAAAATGG ATCATCAGGA GATAATAACT CAGACGACTG GATGTTCGAT 
900
ATGAATAGAA AATCGAGAGA TAGCGAGGAA TTGACGAATC CTCTAGAGAA 
950
ATCAAATGGT CTATGGACCA ATTCTTCCGG AGAAGCACGT TTGCATGGGA 
1000
AGTTAATCGA TAATGTTGCA GAAATTATGC TACCTTCTGA GAAGGAACTA 
1050
GATGGAAAGT GCTCAAGTTA TGAGAGAATA TCATCAGAAG AGATGAGCTC 
1100
ATCAAGCATC TCGGGAACAA GCCCTTTCAA GCCAAATCTT GAGTTTACTC 
1150
TGGGTCGATC TCACTAA
1200

>AT1G32240.1 longest ORF length:388
MELFPAQPDL SLQISPPNSK PSSTWQRRRS TTDQEDHEEL DLGFWRRALD 
50
SRTSSLVSNS TSKTINHPFQ DLSLSNISHH QQQQQHHHPQ LLPNCNSSNI 
100
LTSFQFPTQQ QQQHLQGFLA HDLNTHLRPI RGIPLYHNPP PHHHPHRPPP 
150
PCFPFDPSSL IPSSSTSSPA LTGNNNSFNT SSVSNPNYHN HHHQTLNRAR 
200
FMPRFPAKRS MRAPRMRWTT TLHARFVHAV ELLGGHERAT PKSVLELMDV 
250
KDLTLAHVKS HLQMYRTVKT TDKAAASSGQ SDVYENGSSG DNNSDDWMFD 
300
MNRKSRDSEE LTNPLEKSNG LWTNSSGEAR LHGKLIDNVA EIMLPSEKEL 
350
DGKCSSYERI SSEEMSSSSI SGTSPFKPNL EFTLGRSH
400