fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G34180 ANAC016 NAC domain containing protein 16 (.1.2)

>AT1G34180.2 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, EcoRV, KpnI, NdeI, NheI, NotI, PacI, PstI, PvuII, SalI
Name Recognition sequence Cut positions
BglII A|GATCT 110, 373, 1143
EcoRI G|AATTC 936
HindIII A|AGCTT 520, 727
HpaI GTT|AAC 760
NcoI C|CATGG 1068
SacI GAGCT|C 1024
SmaI CCC|GGG 754
SpeI A|CTAGT 1591
StyI C|C[AT][AT]GG 271, 1068
XbaI T|CTAGA 972
XhoI C|TCGAG 915


Click here to view TAIR data

>AT1G34180.2 length:1731
ATGGTTGATT CTTCTCGTGA TTCGTGTTTC AAAGCTGGTA AGTTTAGTGC 
50
TCCAGGTTTT CGATTTCACC CTACTGATGA AGAGCTTGTG GTTTATTATC 
100
TTAAGAGGAA GATCTGTTGT AAAAAACTTC GAGTCAATGC CATTGGTGTC 
150
GTTGATGTTT ACAAAGTCGA TCCTTCTGAA TTGCCTGGTA ATTTTCAACA 
200
CCTTCTTATC GATTTTGATT CATGTCTATC GATGTTGAAG ACGGGAGATA 
250
GACAGTGGTT CTTTTTCACT CCAAGGAATA GGAAGTATCC TAACGCAGCT 
300
AGGTCAAGTA GAGGTACTGC AACTGGTTAT TGGAAGGCGA CAGGAAAGGA 
350
TCGAGTCATT GAGTACAATT CAAGATCTGT TGGACTCAAG AAGACTCTTG 
400
TTTTCTATAG AGGTCGTGCT CCTAATGGTG AGAGAACTGA CTGGGTGATG 
450
CATGAGTACA CTATGGATGA AGAAGAGCTA GGGAGATGTA AGAACGCTAA 
500
GGAGTATTAT GCTCTTTATA AGCTTTATAA GAAGAGTGGG GCTGGTCCTA 
550
AGAATGGTGA ACAGTATGGT GCTCCGTTCC AAGAAGAAGA ATGGGTTGAT 
600
AGTGATAGTG AAGATGCAGA TAGTGTCGCT GTACCGGATT ATCCCGTGGT 
650
CCGTTATGAG AATGGTCCTT GTGTGGATGA TACTAAATTT TGCAATCCTG 
700
TCAAACTTCA GTTAGAGGAT ATTGAGAAGC TTCTCAATGA AATCCCAGAT 
750
GCACCCGGGG TTAACCAAAG ACAGTTTGAT GAGTTTGTTG GTGTTCCACA 
800
GGGTAATAGT GCAGAAGTGA TACAGAGCAC ATTGCTGAAT AATTCTTCTG 
850
GAGAGTATAT TGACCCTCGG ACGAATGGAA TGTTCTTGCC AAATGGCCAG 
900
CTATACAACA GGGACTCGAG TTTTCAGTCC CATTTGAATT CATTTGAGGC 
950
TACCTCTGGT ATGGCACCTC TTCTAGATAA TGAGAAGGAG GAGTACATTG 
1000
AAATGAATGA TCTTCTGATC CCTGAGCTCG GTGCTTCTTC AACAGAGAAA 
1050
TCCACAGAGT TCTTGAACCA TGGTGAATTT GGTGATGTTA ATGAATACGA 
1100
CCAATTGTTC AATGACATAT CTGTTTTTCA GGGAACTTCT ACAGATCTGT 
1150
CTTGTCTGAG TAATTTTACT AATAACACAT CAGGCCAAAG ACAGCAATTA 
1200
CTTTATGAAC AGTTCCAGTA CCAGACACCT GAGAACCAGC TTAATAACTA 
1250
CATGCATCCT AGTACCACTC TTAATCAGTT CACTGACAAT ATGTGGTTTA 
1300
AAGATGATCA GGCTGCTCTC TATGTTCAAC CACCACAATC TTCTTCTGGA 
1350
GCATTCACTT CACAGTCAAC AGGTGTGATG CCTGAGTCTA TGAATCCCAC 
1400
TATGAGTGTA AATCCCCAAT ACAAGGAAGG ACAAAATGGT GGTGGAACAA 
1450
GGAGCCAGTT CTCATCAGCT CTGTGGGAAT TATTGGAATC AATACCATCA 
1500
ACACCAGCCT CTGCCTGTGA GGGTCCTCTT AACCAGACCT TTGTGCGTAT 
1550
GTCTAGCTTC AGCCGCATCA GGTTCAATGG AACGTCAGTG ACTAGTAGAA 
1600
AAGTCACTGT AGCAAAGAAG CGTATCAGTA ACAGAGGTTT TCTTCTGTTA 
1650
TCAATTATGG GTGCTTTGTG TGCTATCTTC TGGGTGTTCA AAGCCACCGT 
1700
TGGAGTTATG GGAAGACCTC TCTTGTCGTG A
1750

>AT1G34180.2 longest ORF length:576
MVDSSRDSCF KAGKFSAPGF RFHPTDEELV VYYLKRKICC KKLRVNAIGV 
50
VDVYKVDPSE LPGNFQHLLI DFDSCLSMLK TGDRQWFFFT PRNRKYPNAA 
100
RSSRGTATGY WKATGKDRVI EYNSRSVGLK KTLVFYRGRA PNGERTDWVM 
150
HEYTMDEEEL GRCKNAKEYY ALYKLYKKSG AGPKNGEQYG APFQEEEWVD 
200
SDSEDADSVA VPDYPVVRYE NGPCVDDTKF CNPVKLQLED IEKLLNEIPD 
250
APGVNQRQFD EFVGVPQGNS AEVIQSTLLN NSSGEYIDPR TNGMFLPNGQ 
300
LYNRDSSFQS HLNSFEATSG MAPLLDNEKE EYIEMNDLLI PELGASSTEK 
350
STEFLNHGEF GDVNEYDQLF NDISVFQGTS TDLSCLSNFT NNTSGQRQQL 
400
LYEQFQYQTP ENQLNNYMHP STTLNQFTDN MWFKDDQAAL YVQPPQSSSG 
450
AFTSQSTGVM PESMNPTMSV NPQYKEGQNG GGTRSQFSSA LWELLESIPS 
500
TPASACEGPL NQTFVRMSSF SRIRFNGTSV TSRKVTVAKK RISNRGFLLL 
550
SIMGALCAIF WVFKATVGVM GRPLLS
600