fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G34370 STOP1 sensitive to proton rhizotoxicity 1, C2H2 and C2HC zinc fingers superfamily protein (.1.2.3)

>AT1G34370.2 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, EcoRV, HpaI, KpnI, NcoI, NheI, NotI, PacI, SalI, XbaI
Name Recognition sequence Cut positions
BamHI G|GATCC 228
BglII A|GATCT 1041
EcoRI G|AATTC 84
HindIII A|AGCTT 993
NdeI CA|TATG 784
PstI CTGCA|G 283, 413
PvuII CAG|CTG 280, 818
SacI GAGCT|C 343, 1215
SmaI CCC|GGG 853
SpeI A|CTAGT 1489
StyI C|C[AT][AT]GG 232, 897, 1239
XhoI C|TCGAG 560


Click here to view TAIR data

>AT1G34370.2 length:1500
ATGGAAACTG AAGACGATTT GTGCAACACC AATTGGGGAA GCTCTTCTTC 
50
GAAATCGCGA GAGCCGGGTT CATCAGACTG TGGGAATTCG ACATTCGCAG 
100
GTTTTACGTC CCAGCAGAAG TGGGAAGATG CTTCAATCTT GGATTATGAG 
150
ATGGGTGTGG AGCCTGGATT GCAAGAGAGC ATTCAAGCAA ATGTTGATTT 
200
CTTACAAGGT GTTAGGGCTC AAGCGTGGGA TCCAAGGACG ATGTTGAGTA 
250
ACCTTTCTTT TATGGAGCAG AAGATTCACC AGCTGCAGGA TCTTGTTCAT 
300
CTTCTTGTTG GTCGTGGTGG GCAGCTTCAA GGTCGTCAAG ACGAGCTCGC 
350
GGCTCAGCAG CAGCAGCTTA TAACGACGGA TCTTACTTCC ATTATCATAC 
400
AGCTTATTTC AACTGCAGGT AGTCTTCTTC CATCTGTTAA GCATAATATG 
450
TCAACAGCTC CGGGTCCATT CACTGGGCAG CCCGGTTCAG CCGTGTTCCC 
500
TTATGTAAGG GAGGCTAATA ACGTTGCTTC ACAGAGTCAG AACAATAACA 
550
ACTGTGGTGC TCGAGAGTTC GATTTGCCTA AGCCGGTTCT TGTTGATGAG 
600
AGGGAAGGTC ATGTTGTGGA GGAACATGAG ATGAAAGATG AAGATGATGT 
650
GGAAGAAGGA GAGAACCTTC CTCCCGGTTC GTATGAGATA TTGCAGCTTG 
700
AGAAAGAAGA GATTCTCGCA CCGCATACTC ACTTCTGCAC GATATGTGGC 
750
AAGGGTTTCA AGAGAGACGC GAATTTGAGG ATGCATATGA GAGGGCATGG 
800
AGATGAGTAC AAAACAGCAG CTGCTCTGGC GAAACCGAAC AAAGAATCCG 
850
TACCCGGGTC TGAGCCGATG CTGATCAAGA GGTACTCGTG CCCATTCCTT 
900
GGTTGCAAAC GTAACAAGGA GCACAAAAAG TTCCAGCCTT TGAAAACGAT 
950
TCTATGCGTG AAGAATCACT ATAAACGCAC CCACTGCGAT AAAAGCTTCA 
1000
CTTGCAGCCG GTGCCATACC AAGAAATTCT CTGTCATTGC AGATCTTAAA 
1050
ACCCACGAGA AGCACTGCGG GAAAAACAAG TGGCTTTGTT CCTGTGGTAC 
1100
AACATTTTCA AGGAAAGACA AGTTGTTTGG TCACATAGCT CTGTTCCAGG 
1150
GACACACGCC TGCAATCCCT CTTGAAGAGA CAAAACCATC AGCCAGTACA 
1200
TCTACTCAGA GAGGGAGCTC TGAAGGCGGG AACAACAACC AAGGAATGGT 
1250
TGGCTTCAAT CTTGGTTCTG CATCAAATGC TAACCAAGAA ACCACACAGC 
1300
CTGGAATGAC TGATGGGAGG ATATGTTTTG AGGAGTCGTT CTCACCAATG 
1350
AACTTTGATA CATGTAATTT TGGAGGGTTC CACGAGTTTC CGCGACTGAT 
1400
GTTTGATGAT TCAGAGAGTT CTTTTCAAAT GCTTATTGCG AATGCCTGTG 
1450
GTTTCTCGCC CAGGAATGTT GGTGAGTCTG TTTCAGATAC TAGTCTCTAA 
1500

>AT1G34370.2 longest ORF length:499
METEDDLCNT NWGSSSSKSR EPGSSDCGNS TFAGFTSQQK WEDASILDYE 
50
MGVEPGLQES IQANVDFLQG VRAQAWDPRT MLSNLSFMEQ KIHQLQDLVH 
100
LLVGRGGQLQ GRQDELAAQQ QQLITTDLTS IIIQLISTAG SLLPSVKHNM 
150
STAPGPFTGQ PGSAVFPYVR EANNVASQSQ NNNNCGAREF DLPKPVLVDE 
200
REGHVVEEHE MKDEDDVEEG ENLPPGSYEI LQLEKEEILA PHTHFCTICG 
250
KGFKRDANLR MHMRGHGDEY KTAAALAKPN KESVPGSEPM LIKRYSCPFL 
300
GCKRNKEHKK FQPLKTILCV KNHYKRTHCD KSFTCSRCHT KKFSVIADLK 
350
THEKHCGKNK WLCSCGTTFS RKDKLFGHIA LFQGHTPAIP LEETKPSAST 
400
STQRGSSEGG NNNQGMVGFN LGSASNANQE TTQPGMTDGR ICFEESFSPM 
450
NFDTCNFGGF HEFPRLMFDD SESSFQMLIA NACGFSPRNV GESVSDTSL
500