fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G34790 WIP1, TT1 WIP domain protein 1, transparent testa 1, C2H2 and C2HC zinc fingers superfamily protein (.1)

>AT1G34790.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BglII, EcoRI, HpaI, KpnI, NcoI, NheI, NotI, PacI, PstI, SacI, SalI, SmaI, SpeI, StyI, XbaI, XhoI
Name Recognition sequence Cut positions
BamHI G|GATCC 392, 563
EcoRV GAT|ATC 24
HindIII A|AGCTT 706
NdeI CA|TATG 341
PvuII CAG|CTG 307


Click here to view TAIR data

>AT1G34790.1 length:912
ATGGAGTCAC CACCACTATA CGAGATATCC TCAAGCTCTT CTTCTGAAAA 
50
ACCTAGACAC CATTTCCAAT CCCTTGATCT CTTCCCTAAC CTCAACCAAA 
100
ACTCTTGTAT CAACAATACC CTAATTGAGC CTTTACCGCT TATTGATCGC 
150
ATAAACTTGA ACTCAAACCT AGACCTAAAC CCTAATCCCT TGTATGCGGA 
200
AGAAGGAGAG CAAGAGGAGG AAGAAGAAGA AGAAGAAGAC CGTGAAGTGG 
250
ACGTGGACTT ACACATCGGC CTTCCTGGTT TTGGTAAACC AAGCAATGAT 
300
GCTAAACAGC TGAAGAAGAG AAATGGGAAG GAGATCGCCA CATATGACGC 
350
CGGAAAAGGC ATCGAGAATG AACTTTCCGG AAAGGCATAC TGGATCCCGG 
400
CGCCGGAGCA AATTCTCATA GGGTTCACTC ATTTTTCTTG CCATGTATGC 
450
TTCAAGACAT TCAATCGCTA CAACAATCTT CAGATGCACA TGTGGGGACA 
500
TGGTTCACAA TACAGGAAAG GACCGGAGTC ACTGAAAGGC ACACAGCCAC 
550
GAGCCATGTT AGGGATCCCT TGTTACTGCT GCGTTGAAGG GTGCAGGAAC 
600
CACATTGACC ATCCTCGTTC CAAGCCACTG AAAGACTTTA GGACGCTCCA 
650
AACGCACTAC AAACGCAAAC ACGGACACAA ACCCTTCTCG TGTCGCCTTT 
700
GCGGTAAGCT TTTGGCTGTC AAGGGCGATT GGCGAACACA TGAGAAGAAT 
750
TGTGGAAAAC GTTGGGTTTG CGTTTGCGGT TCTGATTTTA AACACAAACG 
800
TTCTCTTAAG GACCATGTTA AGGCGTTTGG GTCTGGTCAT GGGCCTTATC 
850
CAACTGGTTT GTTTGAAGAG CAGGCTTCTA ATTCATCTGT CTCCGAGACT 
900
TTGTTTTTTT AA
950

>AT1G34790.1 longest ORF length:303
MESPPLYEIS SSSSSEKPRH HFQSLDLFPN LNQNSCINNT LIEPLPLIDR 
50
INLNSNLDLN PNPLYAEEGE QEEEEEEEED REVDVDLHIG LPGFGKPSND 
100
AKQLKKRNGK EIATYDAGKG IENELSGKAY WIPAPEQILI GFTHFSCHVC 
150
FKTFNRYNNL QMHMWGHGSQ YRKGPESLKG TQPRAMLGIP CYCCVEGCRN 
200
HIDHPRSKPL KDFRTLQTHY KRKHGHKPFS CRLCGKLLAV KGDWRTHEKN 
250
CGKRWVCVCG SDFKHKRSLK DHVKAFGSGH GPYPTGLFEE QASNSSVSET 
300
LFF
350