fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G35240 ARF20 auxin response factor 20 (.1)

>AT1G35240.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, EcoRV, KpnI, NdeI, NheI, NotI, PacI, PstI, PvuII, SacI, SalI, SmaI, SpeI, XhoI
Name Recognition sequence Cut positions
BamHI G|GATCC 55
BglII A|GATCT 495
EcoRI G|AATTC 577, 1120, 1687
HindIII A|AGCTT 229
HpaI GTT|AAC 558
NcoI C|CATGG 501, 1678
StyI C|C[AT][AT]GG 501, 1304, 1678
XbaI T|CTAGA 1213


Click here to view TAIR data

>AT1G35240.1 length:1773
ATGGAAACTG GCAACGTTGT GAATGCACAA CCTGAATTAT CAGGCATAAT 
50
TGATGGATCC AAGAGCTATA TGTACGAGCA GTTATGGAAA CTCTGTGCGG 
100
GACCTTTGTG TGATATTCCA AAACTTGGAG AAAATGTTTA TTACTTTCCT 
150
CAAGGCAATA TAGAGCTTGT TGATGCATCT ACAAGAGAAG AGTTGAATGA 
200
GTTACAACCA ATTTGTGATC TTCCTTCTAA GCTTCAATGC CGTGTTATTG 
250
CAATTCATCT TAAGGTGGAA AACAATAGTG ATGAGACTTA TGCTGAGATC 
300
ACTTTGATGC CAGATACAAC TCAAGTTGTA ATCCCTACTC AGAGTGAAAA 
350
TCAATTTAGG CCATTAGTTA ATTCCTTTAC GAAGGTTTTA ACGGCCTCTG 
400
ATACAAGCGC TTATGGTGGA TTCTTTGTTC CGAAAAAACA TGCCATTGAA 
450
TGTCTCCCTC CACTGCCTCT ACCGGCACAA GAACTTCTTG CTAAAGATCT 
500
CCATGGTAAT CAATGGAGAT TCAGACACAG CTATAGAGGT ACACCGCAAA 
550
GACATTCGTT AACAACTGGT TGGAATGAAT TCACAACATC GAAAAAGTTG 
600
GTTAAAGGAG ATGTTATTGT ATTCGTTAGG GGAGAGACTG GAGAGTTACG 
650
AGTTGGTATC AGACGAGCAA GACATCAACA AGGGAATATA CCTTCATCAA 
700
TAGTATCAAT AGATTGTATG AGACATGGGG TAATTGCTTC CGCAAAGCAT 
750
GCTCTTGATA ACCAATGTAT ATTCATTGTG GTTTACAAGC CAAGTATCAG 
800
GTCAAGTCAA TTTATTGTCA GTTACGACAA ATTCTTAGAC GCTATGAACA 
850
ATAAGTTCAT TGTCGGTTCA AGATTTACAA TGCGGTTTGA GGGTGATGAT 
900
TTCTCTGAAA GAAGATATTT TGGGACAATT ATTGGAGTTA ATGATTTCTC 
950
TCCTCATTGG AAGTGTTCAG AGTGGCGCAG CTTAGAAGTT CAGTGGGATG 
1000
AATTTGCATC ATTTTCGAGA CCTAATAAAG TGTCACCCTG GGAGATCGAA 
1050
CATTTAATGT CTGCGTTAAA TGTTCCGCGA TCATCTTTGC TCAAGAACAA 
1100
GCGTTTACGA GAAGTTAATG AATTCGGACA AGAAATTGGA CAACTAAGCG 
1150
TCGCCTCCCC GATGAATACT TCTCTTCGTT ATCGTGATAC AACTGAAGAT 
1200
GCTATGAATC CTTCTAGATT GCTAATGAGC TACCCTGTCC AACCAATGCC 
1250
CAAACTAAAT TACAATAACC AAATGGTTAC ACAAATAGAA GAAAATATAA 
1300
CAACCAAGGC AGTCACTAAT TTTAGGCTGT TTGGAGTCTC TCTAGCCATT 
1350
CCTCTAGTGA TCAAAGATCC CATTGAAGAA ATTGGCTCGG ATATTTCGAA 
1400
ACTTACTGAA GGAAAAAAGT TTGGTCAAAG CCAAACTTTG AGATCACCAA 
1450
TAGAGATCCA AAGCAAGCAG TTTGGTTCTA CTAGAACTTG TACCAAAGTT 
1500
CAAATGCAAG GTGTAACAAT AGGAAGAGCT GTGGATTTAA GTGTTCTTAA 
1550
TGGATATGAT CAGCTAATAC TAGAATTGGA GAAGCTCTTT GATCTCAAAG 
1600
GCCAACTACA AACTCGCAAC CAATGGAAAA TAGCTTTCAC AGATAGTGAC 
1650
GGGTATGAGA TGCTTGTTGG AGACGATCCA TGGCCTGAAT TCTGCAAAAT 
1700
GGTGAAGAAG ATATTGATAT ATTCAAAAGA GGAGGTCAAA AACCTAAAGT 
1750
CCAGTAAGAG TCTCTCAAGT TGA
1800

>AT1G35240.1 longest ORF length:590
METGNVVNAQ PELSGIIDGS KSYMYEQLWK LCAGPLCDIP KLGENVYYFP 
50
QGNIELVDAS TREELNELQP ICDLPSKLQC RVIAIHLKVE NNSDETYAEI 
100
TLMPDTTQVV IPTQSENQFR PLVNSFTKVL TASDTSAYGG FFVPKKHAIE 
150
CLPPLPLPAQ ELLAKDLHGN QWRFRHSYRG TPQRHSLTTG WNEFTTSKKL 
200
VKGDVIVFVR GETGELRVGI RRARHQQGNI PSSIVSIDCM RHGVIASAKH 
250
ALDNQCIFIV VYKPSIRSSQ FIVSYDKFLD AMNNKFIVGS RFTMRFEGDD 
300
FSERRYFGTI IGVNDFSPHW KCSEWRSLEV QWDEFASFSR PNKVSPWEIE 
350
HLMSALNVPR SSLLKNKRLR EVNEFGQEIG QLSVASPMNT SLRYRDTTED 
400
AMNPSRLLMS YPVQPMPKLN YNNQMVTQIE ENITTKAVTN FRLFGVSLAI 
450
PLVIKDPIEE IGSDISKLTE GKKFGQSQTL RSPIEIQSKQ FGSTRTCTKV 
500
QMQGVTIGRA VDLSVLNGYD QLILELEKLF DLKGQLQTRN QWKIAFTDSD 
550
GYEMLVGDDP WPEFCKMVKK ILIYSKEEVK NLKSSKSLSS 
600