fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G35490 bZIP family transcription factor (.1)

>AT1G35490.1 CDS map

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Uncut enzymes: AatII, Acc65I, AccI, AccIII(BspMII), AciI, AclI, AfeI, AflII, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AseI, AvrII, BaeI, BalI, BamHI, BanI, BbsI, BbvCI, BbvI, BcgI, BciVI, BclI, BglI, BglII, BmrI, BpmI, BsaAI, BsaHI, BsaI, BsaWI, BsaXI, BseRI, BsgI, BsiEI, BsiWI, BslI, BsmAI, BsmBI, BsmFI, BsmI, BspEI, BspHI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrFI, BsrGI, BsrI, BssHII, BssSI, BstEII, BstNI, BstXI, BstYI, BstZ17I, Bsu36I, BtgI, BtrI, BtsI, Cfr10I, DraIII, DrdI, EaeI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HaeII, HaeIII, HgaI, HincII, HpaI, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MluI, MlyI, MnlI, MscI, N.BstNBI, NaeI, , NarI, NcoI, NdeI, NgoMIV, NheI, NlaIV, NotI, NruI, NsiI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PflFI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspGI, PspOMI, PstI, PvuI, RsrII, SacII, SalI, SapI, SbfI, ScaI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SnaBI, SpeI, SphI, SspI, StuI, SwaI, TliI, TspRI, Tth111I, XbaI, XhoI, XmnI
Name Recognition sequence Cut positions
AccII(FnuDII) CG|CG 546
AflIII A|CPuPyGT 450, 729
AluI AG|CT 160, 174, 226, 238, 256, 415, 679, 720
ApoI Pu|AATTPy 6, 33
AvaI C|PyCGPuG 27
AvaII G|G[AT]CC 492, 586
BanII GPuGCPy|C 175
BfaI C|TAG 228, 495
BlpI GC|TNAGC 664
BsaBI GATNN|NNATC 57
BsaJI C|CNNGG 27, 890
BsiHKAI G[AT]GC[AT]|C 175
BsoBI C|PyCGPuG 27
Bsp1286I G[GAT]GC[CAT]|C 175
BspDI AT|CGAT 833
BssKI |CCNGG 26
BstAPI GCANNNN|NTGC 743
BstBI TT|CGAA 270
BstF5I GGATGNN| 362, 614
BstUI CG|CG 546
Cac8I GCN|NGC 189
ClaI AT|CGAT 833
DdeI C|TNAG 180, 199, 254, 663
DpnI GA-CH3|TC 51, 137, 498, 644
DpnII |GATC 51, 137, 498, 644
DraI TTT|AAA 420, 684
Fnu4HI GC|NGC 240, 737, 885
HhaI GCG|C 545
HinP1I G|CGC 545
HindIII A|AGCTT 721
HinfI G|ANTC 40, 510
HpaII C|CGG 26
Hpy188I TCN|GA 37, 573
Hpy99I CG[AT]CG| 430, 777
HpyCH4III ACN|GT 770
HpyCH4IV A|CGT 220, 517, 691
HpyCH4V TG|CA 111, 883
MboI |GATC 51, 137, 498, 644
MfeI C|AATTG 742
MseI T|TAA 8, 204, 260, 419, 683, 723
MslI CAPyNN|NNPuTG 122, 533, 595
MspA1I C[AC]G|C[GT]G 239
MspI C|CGG 26
MwoI GCNNNNN|NNGC 173, 543, 743, 882
NciI CC|[CG]GG 26
NlaIII CATG| 79, 281, 408, 449, 658, 667, 728
NspI PuCATG|Py 450, 729
PciI A|CATGT 450, 729
PvuII CAG|CTG 239
RsaI GT|AC 565
SacI GAGCT|C 175
Sau3AI |GATC 51, 137, 498, 644
Sau96I G|GNCC 492, 586
ScrFI CC|NGG 26
SfcI C|TPuPyAG 374, 769
SmaI CCC|GGG 27
SmlI C|TPyPuAG 562, 748
StyI C|C[AT][AT]GG 890
Taqƒ¿I T|CGA 168, 269, 431, 541, 775, 832
TfiI G|A[AT]TC 40
TseI G|C[AT]GC 240, 737, 885
Tsp45I |GT[CG]AC 232
Tsp509I |AATT 5, 32, 354, 741, 879
XcmI CCANNNNN|NNNNTGG 641
XmaI C|CCGGG 27


Click here to view TAIR data

>AT1G35490.1 length:903
ATGGAAAATT TAAGGAGGTT GTCAAACCCG GGAAATTTCG GATTCATTGG 
50
AAGATCACAA TCACGAGTTC CCCAAAAAAA CATGGAAAAT AACATTTCTC 
100
CTCCTAATAA TATGCACCAC CATAGTGCTT CTTTAGATGA TCTTTTCACA 
150
GAAGACCAAC CAGCTTGGCT CGATGAGCTC CTAAGTGAGC CAGCATCACC 
200
TAAGATTAAC AAAGGTCATA GACGTTCAGC TAGTGACACA GCTGCTTACT 
250
TGAACTCAGC TTTAATGCCT TCGAAGGAAA ATCATGTTGC TGGTTCGTCT 
300
TGGCAGTTCC AGAACTATGA TTTGTGGCAG TCCAACTCTT ATGAACAACA 
350
CAATAAATTA GGATGGGATT TCTCTACAGC AAATGGAACT AATATCCAAA 
400
GAAATATGTC ATGCGGAGCT TTAAATATGT CGTCGAAACC CATTGAGAAA 
450
CATGTAAGCA AAATGAAAGA AGGAACTTCT ACAAAACCAG ATGGTCCTAG 
500
ATCAAAGACT GACTCAAAAC GTATCAAACA TCAAAATGCT CATCGAGCGC 
550
GTTTGAGAAG GCTTGAGTAC ATATCAGACC TTGAAAGGAC CATCCAAGTG 
600
CTACAAGTTG AAGGATGTGA AATGTCATCT GCCATTCACT ACTTGGATCA 
650
GCAGTTACTC ATGCTTAGCA TGGAAAATAG AGCTTTAAAA CAACGTATGG 
700
ATAGTTTAGC AGAAATCCAA AAGCTTAAAC ATGTGGAGCA GCAATTGCTT 
750
GAGAGAGAGA TAGGAAACCT ACAGTTTCGA CGACACCAAC AACAACCACA 
800
GCAAAACCAA AAACAAGTCC AAGCAATACA AAATCGATAC AACAAATATC 
850
AACCACCTGT TACACAAGAA CCCGATGCCC AATTTGCAGC CTTGGCAATA 
900
TGA
950

>AT1G35490.1 longest ORF length:300
MENLRRLSNP GNFGFIGRSQ SRVPQKNMEN NISPPNNMHH HSASLDDLFT 
50
EDQPAWLDEL LSEPASPKIN KGHRRSASDT AAYLNSALMP SKENHVAGSS 
100
WQFQNYDLWQ SNSYEQHNKL GWDFSTANGT NIQRNMSCGA LNMSSKPIEK 
150
HVSKMKEGTS TKPDGPRSKT DSKRIKHQNA HRARLRRLEY ISDLERTIQV 
200
LQVEGCEMSS AIHYLDQQLL MLSMENRALK QRMDSLAEIQ KLKHVEQQLL 
250
EREIGNLQFR RHQQQPQQNQ KQVQAIQNRY NKYQPPVTQE PDAQFAALAI 
300