fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G35560 TCP23 TCP family transcription factor (.1)

>AT1G35560.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, EcoRI, EcoRV, HindIII, HpaI, KpnI, NdeI, NheI, NotI, PacI, PstI, PvuII, SacI, SalI, SpeI, XhoI
Name Recognition sequence Cut positions
BamHI G|GATCC 604, 765
BglII A|GATCT 543
NcoI C|CATGG 65
SmaI CCC|GGG 807
StyI C|C[AT][AT]GG 65, 164
XbaI T|CTAGA 567


Click here to view TAIR data

>AT1G35560.1 length:1026
ATGGAGTCCC ACAACAACAA CCAGAGCAAC AACAACACCA CTGGTTCGGC 
50
CCATCTGGTC CCATCCATGG GACCAATCTC CGGTTCAGTC TCATTAACCA 
100
CCACTGCTCC AAACTCCACT ACCACCACCG TCACCGCCGC TAAAACACCC 
150
GCAAAACGAC CGTCCAAGGA CCGTCACATC AAAGTAGACG GACGTGGCCG 
200
GAGGATACGT ATGCCGGCTA TCTGCGCAGC ACGTGTCTTC CAACTAACAC 
250
GTGAGTTACA ACACAAATCG GACGGCGAGA CTATAGAGTG GCTGCTCCAA 
300
CAAGCGGAGC CAGCTATCAT CGCAGCCACC GGAACTGGAA CCATACCGGC 
350
GAATATCTCT ACTTTGAACA TCTCTCTTCG AAGCAGTGGC TCTACTCTTT 
400
CAGCTCCACT GTCTAAATCT TTCCACATGG GAAGAGCGGC TCAAAACGCT 
450
GCCGTTTTTG GGTTCCAGCA ACAGCTTTAT CATCCTCATC ATATCACGAC 
500
AGATTCTTCT TCTTCTTCTC TTCCCAAAAC ATTCCGTGAA GAAGATCTTT 
550
TTAAAGATCC TAATTTTCTA GATCAAGAAC CCGGTTCAAG ATCACCTAAA 
600
CCGGGATCCG AAGCTCCTGA TCAAGATCCG GGTTCGACCC GGTCAAGAAC 
650
ACAAAATATG ATACCGCCGA TGTGGGCACT AGCGCCAACG CCAGCCTCCA 
700
CAAACGGAGG TAGTGCTTTT TGGATGTTAC CAGTCGGAGG AGGAGGAGGT 
750
CCGGCTAACG TTCAGGATCC ATCACAGCAC ATGTGGGCGT TTAATCCGGG 
800
TCATTACCCG GGTCGAATCG GGTCGGTTCA GCTAGGGTCT ATGTTAGTGG 
850
GAGGTCAACA GTTAGGGTTA GGTGTTGCAG AAAATAACAA TTTGGGGCTA 
900
TTTTCCGGCG GAGGAGGAGA CGGTGGTCGG GTTGGTCTCG GAATGAGTCT 
950
TGAGCAAAAG CCTCAACATC AAGTGAGTGA TCATGCTACT AGAGACCAAA 
1000
ATCCTACTAT AGATGGTTCT CCTTGA
1050

>AT1G35560.1 longest ORF length:341
MESHNNNQSN NNTTGSAHLV PSMGPISGSV SLTTTAPNST TTTVTAAKTP 
50
AKRPSKDRHI KVDGRGRRIR MPAICAARVF QLTRELQHKS DGETIEWLLQ 
100
QAEPAIIAAT GTGTIPANIS TLNISLRSSG STLSAPLSKS FHMGRAAQNA 
150
AVFGFQQQLY HPHHITTDSS SSSLPKTFRE EDLFKDPNFL DQEPGSRSPK 
200
PGSEAPDQDP GSTRSRTQNM IPPMWALAPT PASTNGGSAF WMLPVGGGGG 
250
PANVQDPSQH MWAFNPGHYP GRIGSVQLGS MLVGGQQLGL GVAENNNLGL 
300
FSGGGGDGGR VGLGMSLEQK PQHQVSDHAT RDQNPTIDGS P
350