fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G43160 RAP2.6, RAP2.06 related to AP2 6 (.1)

>AT1G43160.1 CDS map

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Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, EcoRV, HpaI, KpnI, NdeI, NheI, NotI, PacI, PstI, SacI, SalI, SmaI, SpeI, XbaI, XhoI
Name Recognition sequence Cut positions
HindIII A|AGCTT 337
NcoI C|CATGG 202, 535
PvuII CAG|CTG 128
StyI C|C[AT][AT]GG 161, 202, 535


Click here to view TAIR data

>AT1G43160.1 length:579
ATGGTGTCTA TGCTGACTAA TGTTGTCTCT GGTGAGACCG AACCCTCGGC 
50
ATCTGCGACA TGGACGATGG GTCATAAGAG AGAAAGAGAA GAGTTTTCTT 
100
TGCCTCCTCA ACCATTGATT ACCGGTTCAG CTGTGACTAA AGAATGTGAA 
150
AGCTCAATGT CCTTGGAGAG GCCAAAAAAA TATAGAGGAG TAAGGCAACG 
200
ACCATGGGGA AAATGGGCGG CGGAGATTCG AGACCCACAC AAGGCGACAC 
250
GTGTATGGCT TGGGACATTC GAGACAGCCG AGGCCGCCGC AAGAGCCTAT 
300
GATGCGGCAG CACTTCGCTT TAGAGGAAGC AAAGCAAAGC TTAATTTCCC 
350
CGAAAATGTT GGAACTCAGA CGATTCAACG AAATTCTCAT TTCTTGCAAA 
400
ACTCTATGCA ACCTTCTCTG ACATACATCG ATCAATGTCC AACTCTATTA 
450
TCTTACTCTC GATGTATGGA GCAACAACAA CCATTAGTAG GCATGTTGCA 
500
GCCAACAGAA GAGGAAAATC ACTTTTTCGA AAAACCATGG ACCGAATATG 
550
ATCAATACAA TTACTCCTCT TTTGGTTAA
600

>AT1G43160.1 longest ORF length:192
MVSMLTNVVS GETEPSASAT WTMGHKRERE EFSLPPQPLI TGSAVTKECE 
50
SSMSLERPKK YRGVRQRPWG KWAAEIRDPH KATRVWLGTF ETAEAAARAY 
100
DAAALRFRGS KAKLNFPENV GTQTIQRNSH FLQNSMQPSL TYIDQCPTLL 
150
SYSRCMEQQQ PLVGMLQPTE EENHFFEKPW TEYDQYNYSS FG
200