fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G43640 AtTLP5 tubby like protein 5 (.1)

>AT1G43640.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, EcoRI, EcoRV, HpaI, KpnI, NcoI, NdeI, NheI, NotI, PacI, PstI, PvuII, SacI, SalI, SpeI, XhoI
Name Recognition sequence Cut positions
BglII A|GATCT 135
HindIII A|AGCTT 45
SmaI CCC|GGG 355
StyI C|C[AT][AT]GG 361, 976
XbaI T|CTAGA 807


Click here to view TAIR data

>AT1G43640.1 length:1290
ATGTCGTTTC TGAGTATTGT TCGTGATGTT AGAGATACTG TAGGAAGCTT 
50
TTCGAGACGT AGTTTCGACG TGAGAGTATC TAATGGGACG ACTCATCAGA 
100
GGAGTAAATC TCACGGTGTT GAGGCACATA TTGAAGATCT TATTGTAATC 
150
AAGAACACTC GTTGGGCTAA TTTACCGGCT GCGCTATTAC GAGATGTGAT 
200
GAAAAAGTTG GATGAAAGCG AGAGTACTTG GCCTGCACGT AAACAAGTCG 
250
TTGCTTGTGC TGGTGTCTGC AAGACATGGA GACTAATGTG CAAAGATATT 
300
GTGAAAAGTC CTGAGTTCTC AGGCAAACTC ACATTTCCAG TTTCGTTGAA 
350
ACAGCCCGGG CCTAGGGATG GAATCATACA ATGTTATATC AAAAGAGACA 
400
AGTCTAACAT GACTTACCAC CTTTACCTTT CTCTTAGTCC TGCCATACTT 
450
GTTGAAAGTG GGAAGTTTCT TCTCTCGGCA AAGCGCTCAC GGAGAGCTAC 
500
ATACACAGAG TATGTAATAT CAATGGATGC AGACAACATT TCAAGATCAA 
550
GCAGCACTTA CATTGGCAAA CTGAAGTCTA ACTTTCTAGG GACAAAATTT 
600
ATAGTATATG ATACGGCTCC TGCGTACAAC AGTAGCCAGA TATTGTCCCC 
650
ACCAAACCGG AGTCGTAGTT TCAACTCCAA GAAAGTGTCT CCCAAAGTCC 
700
CTTCTGGAAG TTACAACATT GCTCAAGTTA CATACGAGCT GAACTTGCTT 
750
GGAACCCGTG GACCTCGTAG AATGAACTGC ATTATGCACT CTATCCCCTC 
800
CTTAGCTCTA GAACCCGGAG GTACTGTCCC TAGCCAACCT GAGTTTCTAC 
850
AACGTTCCCT TGATGAATCT TTCCGCAGCA TCGGTTCCTC AAAGATAGTC 
900
AACCACTCGG GAGATTTCAC CCGACCGAAA GAGGAAGAAG GAAAGGTGCG 
950
ACCTTTGGTA CTGAAAACTA AACCGCCAAG GTGGCTCCAA CCGTTGCGAT 
1000
GTTGGTGCCT TAACTTCAAA GGGAGAGTGA CTGTAGCTTC TGTCAAGAAC 
1050
TTCCAGTTGA TGTCCGCTGC AACGGTTCAG CCCGGTAGTG GTAGTGATGG 
1100
TGGAGCATTG GCTACGAGGC CATCGTTATC ACCACAGCAG CCAGAGCAAT 
1150
CAAACCATGA TAAGATAATA CTACACTTTG GGAAAGTGGG TAAGGATATG 
1200
TTCACTATGG ACTATCGTTA TCCTCTCTCT GCCTTTCAAG CGTTTGCCAT 
1250
TTCCCTGAGC ACCTTTGATA CTAAATTGGC ATGTGAATAA 
1300

>AT1G43640.1 longest ORF length:429
MSFLSIVRDV RDTVGSFSRR SFDVRVSNGT THQRSKSHGV EAHIEDLIVI 
50
KNTRWANLPA ALLRDVMKKL DESESTWPAR KQVVACAGVC KTWRLMCKDI 
100
VKSPEFSGKL TFPVSLKQPG PRDGIIQCYI KRDKSNMTYH LYLSLSPAIL 
150
VESGKFLLSA KRSRRATYTE YVISMDADNI SRSSSTYIGK LKSNFLGTKF 
200
IVYDTAPAYN SSQILSPPNR SRSFNSKKVS PKVPSGSYNI AQVTYELNLL 
250
GTRGPRRMNC IMHSIPSLAL EPGGTVPSQP EFLQRSLDES FRSIGSSKIV 
300
NHSGDFTRPK EEEGKVRPLV LKTKPPRWLQ PLRCWCLNFK GRVTVASVKN 
350
FQLMSAATVQ PGSGSDGGAL ATRPSLSPQQ PEQSNHDKII LHFGKVGKDM 
400
FTMDYRYPLS AFQAFAISLS TFDTKLACE
450