fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G44830 Integrase-type DNA-binding superfamily protein (.1)

>AT1G44830.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, EcoRI, HindIII, HpaI, KpnI, NcoI, NdeI, NheI, NotI, PacI, SalI, SmaI, SpeI, StyI, XbaI, XhoI
Name Recognition sequence Cut positions
BamHI G|GATCC 247
BglII A|GATCT 278, 441
EcoRV GAT|ATC 610
PstI CTGCA|G 362
PvuII CAG|CTG 359, 365
SacI GAGCT|C 152


Click here to view TAIR data

>AT1G44830.1 length:636
ATGGTGAAAA CACTTCAAAA GACACCAAAG AGAATGTCAT CTCCATCATC 
50
ATCATCTTCA TCATCCTCAT CAACATCATC ATCATCCATA AGGATGAAGA 
100
AGTACAAGGG AGTGAGAATG AGAAGTTGGG GTTCATGGGT TTCAGAGATC 
150
AGAGCTCCTA ATCAAAAGAC AAGGATCTGG CTTGGTTCTT ACTCAACTGC 
200
TGAAGCCGCG GCTAGAGCCT ACGACGCAGC ACTCCTATGT CTTAAAGGAT 
250
CCTCAGCTAA TAATCTCAAC TTCCCAGAGA TCTCAACTTC TCTCTACCAT 
300
ATTATCAACA ATGGTGATAA CAACAATGAC ATGTCCCCTA AGTCTATACA 
350
AAGAGTAGCA GCTGCAGCTG CTGCTGCCAA CACAGATCCT TCCTCATCAT 
400
CAGTCTCTAC TTCATCTCCA TTGCTTTCCT CTCCATCTGA AGATCTCTAT 
450
GATGTTGTCT CCATGTCACA GTATGACCAA CAAGTCTCCT TGTCTGAATC 
500
ATCATCATGG TACAACTGCT TTGATGGTGA TGATCAGTTC ATGTTCATTA 
550
ATGGAGTCTC CGCGCCGTAT TTGACAACAT CACTTTCTGA TGATTTCTTT 
600
GAGGAAGGAG ATATCAGATT ATGGAACTTC TGCTGA
650

>AT1G44830.1 longest ORF length:211
MVKTLQKTPK RMSSPSSSSS SSSSTSSSSI RMKKYKGVRM RSWGSWVSEI 
50
RAPNQKTRIW LGSYSTAEAA ARAYDAALLC LKGSSANNLN FPEISTSLYH 
100
IINNGDNNND MSPKSIQRVA AAAAAANTDP SSSSVSTSSP LLSSPSEDLY 
150
DVVSMSQYDQ QVSLSESSSW YNCFDGDDQF MFINGVSAPY LTTSLSDDFF 
200
EEGDIRLWNF C
250