fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G46768 RAP2.1 related to AP2 1 (.1)

>AT1G46768.1 CDS map

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Uncut enzymes: AatII, Acc65I, AccII(FnuDII), AclI, AfeI, AflII, AflIII, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, ApoI, AscI, AseI, AvaI, AvrII, BaeI, BalI, BamHI, BanII, BbsI, BbvCI, BbvI, BcgI, BciVI, BclI, BglI, BglII, BlpI, BmrI, BpmI, BsaBI, BsaI, BsaXI, BseRI, BsgI, BsiEI, BsiHKAI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, Bsp1286I, BspDI, BspHI, BspMI, BsrBI, BsrDI, BsrGI, BsrI, BssHII, BssKI, BssSI, BstAPI, BstBI, BstEII, BstF5I, BstNI, BstUI, BstXI, BstYI, BstZ17I, Bsu36I, BtsI, ClaI, DraI, DraIII, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRI, FauI, FokI, FseI, FspI, HgaI, HindIII, HpaI, HphI, Hpy188I, HpyCH4III, I-CeuI, I-SceI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MscI, MseI, MslI, NaeI, , NciI, NcoI, NdeI, NgoMIV, NheI, NotI, NruI, NsiI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PflMI, PleI, PmeI, PpuMI, PshAI, PspGI, PspOMI, PstI, PvuI, PvuII, RsrII, SacI, SacII, SapI, SbfI, ScaI, ScrFI, SexAI, SfaNI, SfcI, SfiI, SgrAI, SmaI, SnaBI, SpeI, SphI, SspI, StuI, StyI, SwaI, TliI, Tsp45I, Tsp509I, TspRI, Tth111I, XbaI, XcmI, XhoI, XmaI, XmnI
Name Recognition sequence Cut positions
AccI GT|[AC][TG]AC 21, 361
AccIII(BspMII) T|CCGGA 448
AciI C|CGC 192, 240, 294, 303, 315, 381, 407
AluI AG|CT 319, 373
AvaII G|G[AT]CC 281
BanI G|GPyPuCC 352
BfaI C|TAG 198, 371
BsaAI PyAC|GTPu 70
BsaHI GPu|CGPyC 352
BsaJI C|CNNGG 231
BsaWI [AT]|CCGG[AT] 448
BslI CCNNNNN|NNGG 93, 447
BspEI T|CCGGA 448
BspT107I(HgiCI) G|G[TC][AG]CC 352
BsrFI Pu|CCGGPy 411
BtgI C|CPuPyGG 231
BtrI CAC|GTC 245
Cac8I GCN|NGC 315
Cfr10I [AG]|CCGG[TC] 411
DdeI C|TNAG 130, 290
DpnI GA-CH3|TC 260
DpnII |GATC 260
DrdI GACNNNN|NNGTC 217
EaeI Py|GGCCPu 215
EcoRV GAT|ATC 187
Fnu4HI GC|NGC 41, 192, 294, 318, 339, 381
HaeII PuGCGC|Py 352
HaeIII GG|CC 214, 233
HhaI GCG|C 351
HinP1I G|CGC 351
HincII GTPy|PuAC 361
HinfI G|ANTC 18, 134, 358, 431, 444
HpaII C|CGG 410, 447
Hpy99I CG[AT]CG| 209, 362
HpyCH4IV A|CGT 69, 210, 244
HpyCH4V TG|CA 270
KasI G|GCGCC 352
MboI |GATC 260
MspA1I C[AC]G|C[GT]G 305
MspI C|CGG 410, 447
MwoI GCNNNNN|NNGC 201, 303, 372
N.BstNBI GAGTCNNNN|N 23, 363
NarI GG|CGCC 352
NlaIII CATG| 310
NlaIV GGN|NCC 235, 352
NspI PuCATG|Py 311
PmlI CAC|GTG 70
PsiI TTA|TAA 326
RsaI GT|AC 88
SalI G|TCGAC 361
Sau3AI |GATC 260
Sau96I G|GNCC 234, 281
SfoI GGC|GCC 352
SmlI C|TPyPuAG 50
Taqƒ¿I T|CGA 360, 389
TfiI G|A[AT]TC 134, 431, 444
TseI G|C[AT]GC 41, 318


Click here to view TAIR data

>AT1G46768.1 length:462
ATGGAAAGAG AACAAGAAGA GTCTACGATG AGAAAGAGAA GGCAGCCACC 
50
TCAAGAAGAA GTGCCTAACC ACGTGGCTAC AAGGAAGCCG TACAGAGGGA 
100
TACGGAGGAG GAAGTGGGGC AAGTGGGTGG CTGAGATTCG TGAGCCTAAC 
150
AAACGCTCAC GGCTTTGGCT TGGCTCTTAC ACAACCGATA TCGCCGCCGC 
200
TAGAGCCTAC GACGTGGCCG TCTTCTACCT CCGTGGCCCC TCCGCACGTC 
250
TCAACTTCCC TGATCTTCTC TTGCAAGAAG AGGACCATCT CTCAGCCGCC 
300
ACCACCGCTG ACATGCCCGC AGCTCTTATA AGGGAAAAAG CGGCGGAGGT 
350
CGGCGCCAGA GTCGACGCTC TTCTAGCTTC TGCCGCTCCT TCGATGGCTC 
400
ACTCCACTCC GCCGGTAATA AAACCCGACT TGAATCAAAT ACCCGAATCC 
450
GGAGATATAT AG
500

>AT1G46768.1 longest ORF length:153
MEREQEESTM RKRRQPPQEE VPNHVATRKP YRGIRRRKWG KWVAEIREPN 
50
KRSRLWLGSY TTDIAAARAY DVAVFYLRGP SARLNFPDLL LQEEDHLSAA 
100
TTADMPAALI REKAAEVGAR VDALLASAAP SMAHSTPPVI KPDLNQIPES 
150
GDI
200