fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G47270 AtTLP6 tubby like protein 6 (.1.2)

>AT1G47270.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, EcoRV, HpaI, KpnI, NdeI, NheI, NotI, PacI, SalI, SmaI, SpeI, XbaI
Name Recognition sequence Cut positions
HindIII A|AGCTT 1190
NcoI C|CATGG 706
PstI CTGCA|G 1067
PvuII CAG|CTG 1061
SacI GAGCT|C 355
StyI C|C[AT][AT]GG 706, 873
XhoI C|TCGAG 582


Click here to view TAIR data

>AT1G47270.1 length:1242
ATGGATTTGT CGCTTTTGTT GCCAAAACGG AGCTGGGAAA TTTCTGGGGG 
50
AGCAGATAAA ATCAGCAGAG TAGCAATGTC ATTGAAGAAC ATAGTGAAGA 
100
ACAAATACAA AGCTATTGGT AGAAGAGGGA GGTCACACAT TGCACCAGAA 
150
GGATCATCTG TGTCTTCTTC TTTATCAACT AATGAAGGTT TAAACCAGAG 
200
TATTTGGGTT GATTTGCCTC CAGAGTTACT TCTTGATATA ATCCAAAGGA 
250
TTGAGTCTGA ACAGAGTTTA TGGCCGGGGA GGAGAGATGT TGTTGCTTGT 
300
GCTTCGGTTT GTAAGTCATG GAGGGAGATG ACTAAAGAAG TTGTTAAAGT 
350
TCCTGAGCTC TCTGGTTTGA TCACGTTTCC GATTTCTTTA AGACAGCCTG 
400
GACCTAGAGA TGCTCCAATT CAATGCTTTA TTAAACGTGA AAGAGCTACG 
450
GGGATATACC GTCTCTATCT TGGTTTAAGC CCTGCTCTTT CCGGTGACAA 
500
GAGTAAGTTG TTGTTATCTG CAAAGAGAGT CAGGAGAGCG ACGGGTGCGG 
550
AGTTTGTTGT ATCGTTATCG GGGAATGACT TCTCGAGAAG TAGTAGTAAT 
600
TACATAGGAA AACTGAGATC AAATTTCCTG GGAACGAAGT TCACAGTCTA 
650
CGAAAACCAA CCTCCTCCGT TTAACCGAAA GCTCCCACCA TCGATGCAAG 
700
TGTCTCCATG GGTATCGTCG TCATCTAGTA GTTACAACAT AGCTTCAATC 
750
TTGTATGAGC TGAATGTTCT GAGAACCAGA GGTCCAAGAA GAATGCAATG 
800
TATAATGCAC AGTATCCCGA TTTCAGCGAT TCAAGAAGGC GGCAAAATCC 
850
AGTCGCCAAC GGAGTTCACA AACCAAGGAA AGAAGAAGAA GAAGCCGCTG 
900
ATGGATTTCT GCTCAGGGAA CCTGGGAGGA GAATCCGTTA TAAAAGAACC 
950
ATTAATTCTG AAAAACAAGT CGCCGAGATG GCACGAACAG CTTCAGTGCT 
1000
GGTGTCTAAA CTTCAAAGGT CGAGTCACAG TCGCCTCGGT GAAAAACTTC 
1050
CAGCTAGTGG CAGCTGCTGC AGAAGCAGGG AAGAACATGA ACATACCAGA 
1100
AGAGGAACAA GATAGAGTGA TATTACAGTT TGGGAAGATA GGCAAAGACA 
1150
TTTTCACAAT GGATTATCGT TACCCGATCT CTGCATTCCA AGCTTTTGCT 
1200
ATTTGTTTAA GCAGCTTCGA CACGAAGCCA GTCTGCGAAT GA
1250

>AT1G47270.1 longest ORF length:413
MDLSLLLPKR SWEISGGADK ISRVAMSLKN IVKNKYKAIG RRGRSHIAPE 
50
GSSVSSSLST NEGLNQSIWV DLPPELLLDI IQRIESEQSL WPGRRDVVAC 
100
ASVCKSWREM TKEVVKVPEL SGLITFPISL RQPGPRDAPI QCFIKRERAT 
150
GIYRLYLGLS PALSGDKSKL LLSAKRVRRA TGAEFVVSLS GNDFSRSSSN 
200
YIGKLRSNFL GTKFTVYENQ PPPFNRKLPP SMQVSPWVSS SSSSYNIASI 
250
LYELNVLRTR GPRRMQCIMH SIPISAIQEG GKIQSPTEFT NQGKKKKKPL 
300
MDFCSGNLGG ESVIKEPLIL KNKSPRWHEQ LQCWCLNFKG RVTVASVKNF 
350
QLVAAAAEAG KNMNIPEEEQ DRVILQFGKI GKDIFTMDYR YPISAFQAFA 
400
ICLSSFDTKP VCE
450