fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G48000 ATMYB112 myb domain protein 112 (.1)

>AT1G48000.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, HindIII, HpaI, KpnI, NheI, NotI, PacI, PstI, PvuII, SalI, SmaI, SpeI, XbaI, XhoI
Name Recognition sequence Cut positions
EcoRI G|AATTC 19
EcoRV GAT|ATC 250
NcoI C|CATGG 106
NdeI CA|TATG 640
SacI GAGCT|C 706
StyI C|C[AT][AT]GG 106


Click here to view TAIR data

>AT1G48000.1 length:732
ATGAATATAA GTAGAACAGA ATTCGCAAAC TGTAAAACCC TTATAAATCA 
50
TAAAGAAGAA GTCGAAGAAG TCGAGAAAAA GATGGAAATA GAAATAAGGA 
100
GAGGTCCATG GACTGTGGAA GAAGACATGA AGCTCGTCAG TTACATTTCT 
150
CTTCACGGTG AAGGAAGATG GAACTCCCTC TCTCGTTCTG CTGGACTGAA 
200
TAGAACGGGG AAAAGTTGCA GATTGCGGTG GCTAAATTAT CTCCGGCCGG 
250
ATATCCGCCG TGGAGACATA TCCCTTCAAG AACAATTTAT CATCCTTGAA 
300
CTCCATTCTC GTTGGGGAAA TCGGTGGTCA AAGATTGCTC AACATTTACC 
350
GGGAAGAACA GATAACGAGA TAAAGAATTA TTGGAGAACA CGTGTTCAAA 
400
AGCATGCAAA ACTTCTAAAA TGTGACGTGA ACAGCAAGCA ATTCAAAGAC 
450
ACCATCAAAC ATCTCTGGAT GCCTCGTCTC ATCGAGAGAA TCGCCGCCAC 
500
TCAAAGTGTC CAATTTACCT CTAACCACTA CTCGCCTGAG AACTCCAGCG 
550
TCGCCACCGC CACGTCATCA ACGTCGTCGT CTGAGGCTGT GAGATCGAGT 
600
TTCTACGGTG GTGATCAGGT GGAATTTGGA ACGTTGGATC ATATGACAAA 
650
TGGTGGTTAT TGGTTCAACG GCGGAGATAC GTTTGAAACT TTGTGTAGTT 
700
TTGACGAGCT CAACAAGTGG CTCATACAGT AG
750

>AT1G48000.1 longest ORF length:243
MNISRTEFAN CKTLINHKEE VEEVEKKMEI EIRRGPWTVE EDMKLVSYIS 
50
LHGEGRWNSL SRSAGLNRTG KSCRLRWLNY LRPDIRRGDI SLQEQFIILE 
100
LHSRWGNRWS KIAQHLPGRT DNEIKNYWRT RVQKHAKLLK CDVNSKQFKD 
150
TIKHLWMPRL IERIAATQSV QFTSNHYSPE NSSVATATSS TSSSEAVRSS 
200
FYGGDQVEFG TLDHMTNGGY WFNGGDTFET LCSFDELNKW LIQ
250