fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G49010 Duplicated homeodomain-like superfamily protein (.1)

>AT1G49010.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, EcoRV, HindIII, HpaI, NheI, NotI, PacI, PstI, SacI, SmaI, SpeI, XbaI
Name Recognition sequence Cut positions
KpnI GGTAC|C 120, 897
NcoI C|CATGG 403
NdeI CA|TATG 784
PvuII CAG|CTG 794
SalI G|TCGAC 930
StyI C|C[AT][AT]GG 403
XhoI C|TCGAG 369


Click here to view TAIR data

>AT1G49010.1 length:945
ATGGAGAGTG TGGTGGCAAC ATGGAGCAGA GAAGAAGAGA AAGCATTCGA 
50
GAACGCAATT GCGTTGCATT GTGTAGAGGA AGAGATAACA GAGGATCAAT 
100
GGAACAAAAT GTCGTCAATG GTACCAAGCA AAGCCTTAGA AGAAGTAAAG 
150
AAACATTACC AAATCCTTTT AGAAGATGTC AAAGCAATCG AGAATGGTCA 
200
AGTTCCTTTA CCTCGTTATC ATCACCGCAA AGGTCTCATC GTAGATGAAG 
250
CAGCAGCAGC AGCTACTTCT CCTGCCAACA GAGACTCTCA TTCCTCTGGA 
300
TCATCTGAGA AGAAACCAAA TCCTGGCACC TCCGGGATAA GTAGCTCCAA 
350
TGGAGGAAGA AGTGGTGGCT CGAGAGCTGA GCAAGAGAGA AGAAAAGGGA 
400
TTCCATGGAC TGAAGAAGAG CATCGGTTGT TTCTTTTGGG TTTGGACAAG 
450
TTTGGGAAAG GAGATTGGAG AAGCATTTCA AGGAACTTTG TGATCTCAAG 
500
AACTCCAACA CAAGTTGCAA GTCATGCTCA AAAATACTTC ATCAGGCTTA 
550
ACTCGATGAA CCGAGATAGA AGGCGGTCTA GCATTCACGA CATCACCACT 
600
GTGAACAATC AAGCTCCTGC GGTTACAGGA GGAGGACAAC AACCGCAAGT 
650
GGTTAAACAT AGACCAGCTC AGCCACAACC ACAGCCACAA CCGCAACCAC 
700
AACAACATCA TCCCCCAACA ATGGCTGGAT TAGGGATGTA TGGTGGTGCG 
750
CCAGTGGGAC AACCGATCAT CGCACCACCT GATCATATGG GTTCAGCTGT 
800
TGGAACACCT GTGATGCTTC CACCTCCAAT GGGAACTCAT CATCATCACC 
850
ATCACCATCA TCTTGGAGTT GCTCCTTATG CTGTACCGGC TTATCCGGTA 
900
CCGCCATTAC CGCAGCAACA TCCAGCTCCG TCGACAATGC ACTGA
950

>AT1G49010.1 longest ORF length:314
MESVVATWSR EEEKAFENAI ALHCVEEEIT EDQWNKMSSM VPSKALEEVK 
50
KHYQILLEDV KAIENGQVPL PRYHHRKGLI VDEAAAAATS PANRDSHSSG 
100
SSEKKPNPGT SGISSSNGGR SGGSRAEQER RKGIPWTEEE HRLFLLGLDK 
150
FGKGDWRSIS RNFVISRTPT QVASHAQKYF IRLNSMNRDR RRSSIHDITT 
200
VNNQAPAVTG GGQQPQVVKH RPAQPQPQPQ PQPQQHHPPT MAGLGMYGGA 
250
PVGQPIIAPP DHMGSAVGTP VMLPPPMGTH HHHHHHHLGV APYAVPAYPV 
300
PPLPQQHPAP STMH
350