|
|
|
|
|
|
|
|
| Locus | Common name | Short description |
| AT1G49190 | ARR19 | response regulator 19 (.1.2) |
>AT1G49190.1 CDS map
>>Show genomic map
Uncut enzymes: AatII, Acc65I, AccI, AccIII(BspMII), AclI, AfeI, AflII, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AseI, AvaI, AvrII, BaeI, BamHI, BanI, BanII, BbsI, BbvCI, BbvI, BcgI, BciVI, BglI, BlpI, BmrI, BpmI, BsaAI, BsaHI, BsaI, BsaXI, BseRI, BsgI, BsiEI, BsiHKAI, BsiWI, BsmAI, BsmBI, BsmFI, BsoBI, Bsp1286I, BspDI, BspEI, BspMI, BspT107I(HgiCI), BsrBI, BsrI, BssHII, BssSI, BstAPI, BstBI, BstEII, BstZ17I, Bsu36I, BtrI, BtsI, ClaI, DraIII, DrdI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HaeII, HgaI, HhaI, HinP1I, HindIII, HpaI, HphI, Hpy99I, I-CeuI, I-SceI, KasI, KpnI, MboII, MluI, MlyI, MnlI, MslI, N.BstNBI, NaeI, , NarI, NcoI, NgoMIV, NheI, NotI, NruI, NsiI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PleI, PmeI, PmlI, PpuMI, PshAI, PspOMI, PstI, PvuI, PvuII, RsrII, SacI, SalI, SapI, SbfI, ScaI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SpeI, SphI, StuI, SwaI, TliI, XbaI, XhoI, XmaI
| Name | Recognition sequence | Cut positions |
| AccII(FnuDII) | CG|CG | 711, 975, 1107, 1260 |
| AciI | C|CGC | 578, 710, 974, 1106, 1259, 1634 |
| AflIII | A|CPuPyGT | 686, 1082 |
| AgeI | A|CCGGT | 405, 486, 609, 741, 873, 1005, 1137 |
| AluI | AG|CT | 202, 221, 286, 532, 1281, 1486 |
| ApoI | Pu|AATTPy | 602, 866, 1294, 1436 |
| AvaII | G|G[AT]CC | 592, 856, 1273, 1548, 1655 |
| BalI | TGG|CCA | 425 |
| BclI | T|GATCA | 584 |
| BfaI | C|TAG | 1377, 1484 |
| BglII | A|GATCT | 621, 1017, 1752 |
| BsaBI | GATNN|NNATC | 344 |
| BsaJI | C|CNNGG | 91, 1108, 1252, 1261, 1500 |
| BsaWI | [AT]|CCGG[AT] | 405, 471, 486, 609, 741, 873, 1005, 1137 |
| BslI | CCNNNNN|NNGG | 89, 433, 1164 |
| BsmI | GAATGCN| | 1346 |
| BspHI | T|CATGA | 155, 671, 803, 1067 |
| BsrDI | GCAATGNN| | 1387 |
| BsrFI | Pu|CCGGPy | 405, 486, 609, 741, 873, 1005, 1137 |
| BsrGI | T|GTACA | 821 |
| BssKI | |CCNGG | 90, 267 |
| BstF5I | GGATGNN| | 475, 1113, 1266 |
| BstNI | CC|[AT]GG | 267 |
| BstUI | CG|CG | 711, 975, 1107, 1260 |
| BstXI | CCANNNNN|NTGG | 654 |
| BstYI | Pu|GATCPy | 498, 621, 1017, 1752 |
| BtgI | C|CPuPyGG | 1108, 1252, 1261 |
| Cac8I | GCN|NGC | 505, 1349 |
| Cfr10I | [AG]|CCGG[TC] | 405, 486, 609, 741, 873, 1005, 1137 |
| DdeI | C|TNAG | 78 |
| DpnI | GA-CH3|TC | 460, 497, 544, 583, 620, 1016, 1618, 1751, 1784 |
| DpnII | |GATC | 460, 497, 544, 583, 620, 1016, 1618, 1751, 1784 |
| DraI | TTT|AAA | 466 |
| EaeI | Py|GGCCPu | 425, 777 |
| Fnu4HI | GC|NGC | 223, 831, 1095, 1259 |
| HaeIII | GG|CC | 424, 776, 1465, 1736 |
| HincII | GTPy|PuAC | 115, 1516 |
| HinfI | G|ANTC | 354, 1188, 1577 |
| HpaII | C|CGG | 89, 404, 470, 485, 500, 608, 740, 872, 1004, 1136 |
| Hpy188I | TCN|GA | 60, 336, 495, 510, 618, 1014, 1157, 1403, 1506 |
| HpyCH4III | ACN|GT | 379, 514, 1165, 1411 |
| HpyCH4IV | A|CGT | 719, 851, 1268 |
| HpyCH4V | TG|CA | 193, 224, 1350 |
| MboI | |GATC | 460, 497, 544, 583, 620, 1016, 1618, 1751, 1784 |
| MfeI | C|AATTG | 847 |
| MscI | TGG|CCA | 425 |
| MseI | T|TAA | 408, 465, 1695 |
| MspA1I | C[AC]G|C[GT]G | 580, 1108, 1261 |
| MspI | C|CGG | 89, 404, 470, 485, 500, 608, 740, 872, 1004, 1136 |
| MwoI | GCNNNNN|NNGC | 201, 1643 |
| NciI | CC|[CG]GG | 90 |
| NdeI | CA|TATG | 262, 1781 |
| NlaIII | CATG| | 142, 154, 230, 588, 670, 685, 802, 817, 934, 949, 984, 1066, 1081, 1116, 1225 |
| NlaIV | GGN|NCC | 1155 |
| NspI | PuCATG|Py | 686, 818, 950, 1082 |
| PciI | A|CATGT | 686, 1082 |
| PflFI | GACN|NNGTC | 526, 1513 |
| PflMI | CCANNNN|NTGG | 433 |
| PsiI | TTA|TAA | 1818 |
| PspGI | |CC[AT]GG | 267 |
| RsaI | GT|AC | 446, 820, 1334, 1479, 1534 |
| SacII | CCGC|GG | 1108, 1261 |
| Sau3AI | |GATC | 460, 497, 544, 583, 620, 1016, 1618, 1751, 1784 |
| Sau96I | G|GNCC | 592, 856, 1273, 1465, 1548, 1655 |
| ScrFI | CC|NGG | 90, 267 |
| SfcI | C|TPuPyAG | 323 |
| SmlI | C|TPyPuAG | 292 |
| SspI | AAT|ATT | 241 |
| StyI | C|C[AT][AT]GG | 1500 |
| Taqƒ¿I | T|CGA | 642, 1308, 1341 |
| TfiI | G|A[AT]TC | 354, 1188, 1577 |
| TseI | G|C[AT]GC | 223, 831, 1095 |
| Tsp45I | |GT[CG]AC | 388, 1051 |
| Tsp509I | |AATT | 84, 122, 271, 601, 846, 865, 993, 1044, 1293, 1315, 1372, 1435, 1692, 1697, 1814, 1820 |
| TspRI | NNCA[CG]TGNN| | 1051, 1471 |
| Tth111I | GACN|NNGTC | 526, 1513 |
| XcmI | CCANNNNN|NNNNTGG | 853 |
| XmnI | GAANN|NNTTC | 602, 734, 866, 998, 1130, 1283, 1721 |
Click here to view TAIR data
>AT1G49190.1 length:1827
ATGTTGGTGG GAAAGATAAG TGGATATGAA GATAATACTC GCTCTTTGGA | 50 |
GCGAGAAACA TCTGAAATCA CTTCTCTTCT CAGCCAATTT CCGGGGAATA | 100 |
CTAATGTCCT TGTTGTTGAC ACCAATTTCA CCACTCTACT CAACATGAAA | 150 |
CAAATCATGA AACAATACGC TTATCAAGTG TCTATTGAGA CAGATGCAGA | 200 |
AAAAGCTCTT GCGTTTTTGA CAAGCTGCAA ACATGAAATC AATATTGTGA | 250 |
TTTGGGATTT TCATATGCCT GGAATTGATG GACTTCAAGC TCTCAAGAGC | 300 |
ATTACTTCAA AGTTGGATTT ACCTGTAGTG ATTATGTCTG ATGATAATCA | 350 |
AACGGAATCT GTGATGAAAG CAACATTTTA CGGTGCTTGT GACTATGTTG | 400 |
TGAAACCGGT TAAAGAAGAG GTAATGGCCA ATATATGGCA ACACATTGTA | 450 |
CGGAAGAGGC TGATCTTTAA ACCGGATGTT GCTCCACCGG TTCAATCAGA | 500 |
TCCGGCTCGC TCTGACCGTT TAGACCAAGT CAAAGCTGAT TTCAAGATCG | 550 |
TAGAAGATGA ACCAATAATC AATGAGACAC CGCTGATCAC ATGGACCGAA | 600 |
GAAATTCAAC CGGTTCAGTC AGATCTGGTT CAAGCCAACA AGTTCGACCA | 650 |
AGTGAATGGC TATTCCCCAA TCATGAACCA AGATAACATG TTCAACAAAG | 700 |
CACCACCTAA ACCGCGAATG ACGTGGACAG AAGTTATTCA ACCGGTTCAA | 750 |
TCAAATCTGG TTCAAACAAA AGAGTTCGGC CAACTCAATG ACTATTCCCA | 800 |
AATCATGAAC CAAGATAGCA TGTACAACAA AGCAGCAACC AAACCACAAT | 850 |
TGACGTGGAC CGAAGAAATT CAACCGGTTC AATCAGGTCT GGTTCAAGCC | 900 |
AACGAGTTCA GCAAAGTGAA TGGATATTCC CAAAGCATGA ACCAAGATAG | 950 |
CATGTTCAAC AAATCAGCAA CCAACCCGCG ATTGACATGG AACGAATTAC | 1000 |
TTCAACCGGT TCAATCAGAT CTGGTTCAAT CCAATGAGTT TAGCCAATTC | 1050 |
AGTGACTATT CTCAAATCAT GAACGAAGAT AACATGTTCA ACAAAGCAGC | 1100 |
AAAGAAACCG CGGATGACAT GGAGTGAAGT ATTTCAACCG GTTCAATCAC | 1150 |
ATCTGGTTCC GACTGACGGT TTAGACCGAG ACCACTTTGA TTCCATAACC | 1200 |
ATAAACGGAG GTAACGGCAT ACAAAACATG GAAAAGAAAC AAGGAAAAAA | 1250 |
ACCACGGAAG CCGCGGATGA CGTGGACCGA AGAGCTTCAC CAAAAATTTC | 1300 |
TGGAAGCCAT CGAAATAATT GGTGCTAACC CAAAGGTACT TGTCGAATGC | 1350 |
TTGCAAGAAA TGAGGATAGA AGGAATTACT AGAAGCAATG TGGCAAGTCA | 1400 |
TCTTCAGAAA CACCGTATCA ATCTTGAAGA AAACCAAATT CCTCAACAAA | 1450 |
CACAAGGGAA TGGTTGGGCC ACTGCGTATG GTACACTAGC TCCCTCTCTC | 1500 |
CAAGGTTCAG ACAATGTCAA CACAACAATA CCATCGTACC TTATGAATGG | 1550 |
TCCAGCCACT TTGAACCAAA TCCAGCAGAA TCAATATCAA AATGGTTTCT | 1600 |
TGACAATGAA CAACAACCAG ATCATAACCA ATCCTCCGCC TCCTTTGCCC | 1650 |
TATTTGGACC ATCATCACCA ACAGCAACAT CAGTCTTCTC CTCAATTTAA | 1700 |
TTACCTGATG AACAATGAAG AACTTCTTCA AGCCTCTGGC CTCTCTGCGA | 1750 |
CAGATCTTGA ACTCACTTAT CCAAGTTTAC CATATGATCC ACAAGAGTAT | 1800 |
CTAATCAATG GCTACAATTA TAATTAG | 1850 |
>AT1G49190.1 longest ORF length:608
MLVGKISGYE DNTRSLERET SEITSLLSQF PGNTNVLVVD TNFTTLLNMK | 50 |
QIMKQYAYQV SIETDAEKAL AFLTSCKHEI NIVIWDFHMP GIDGLQALKS | 100 |
ITSKLDLPVV IMSDDNQTES VMKATFYGAC DYVVKPVKEE VMANIWQHIV | 150 |
RKRLIFKPDV APPVQSDPAR SDRLDQVKAD FKIVEDEPII NETPLITWTE | 200 |
EIQPVQSDLV QANKFDQVNG YSPIMNQDNM FNKAPPKPRM TWTEVIQPVQ | 250 |
SNLVQTKEFG QLNDYSQIMN QDSMYNKAAT KPQLTWTEEI QPVQSGLVQA | 300 |
NEFSKVNGYS QSMNQDSMFN KSATNPRLTW NELLQPVQSD LVQSNEFSQF | 350 |
SDYSQIMNED NMFNKAAKKP RMTWSEVFQP VQSHLVPTDG LDRDHFDSIT | 400 |
INGGNGIQNM EKKQGKKPRK PRMTWTEELH QKFLEAIEII GANPKVLVEC | 450 |
LQEMRIEGIT RSNVASHLQK HRINLEENQI PQQTQGNGWA TAYGTLAPSL | 500 |
QGSDNVNTTI PSYLMNGPAT LNQIQQNQYQ NGFLTMNNNQ IITNPPPPLP | 550 |
YLDHHHQQQH QSSPQFNYLM NNEELLQASG LSATDLELTY PSLPYDPQEY | 600 |
LINGYNYN | 650 |