fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G49480 REM19, RTV1 related to vernalization1 1 (.1)

>AT1G49480.1 CDS map

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Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, HpaI, KpnI, NcoI, NdeI, NheI, NotI, PacI, PvuII, SacI, SalI, SmaI, SpeI, XbaI
Name Recognition sequence Cut positions
EcoRV GAT|ATC 471
HindIII A|AGCTT 150
PstI CTGCA|G 323
StyI C|C[AT][AT]GG 185, 555
XhoI C|TCGAG 577


Click here to view TAIR data

>AT1G49480.1 length:681
ATGCAAATGG ATTCCGCACA GAATCAGTTC AACAAACGTG CTCGATTGTT 
50
TGAAGATCCT GAACTCAAAG ATGCTAAGGT CATTTATCCA TCGAACCCTG 
100
AATCTACTGA ACCAGTGAAT AAAGGTTATG GCGGTTCTAC AGCCATCCAA 
150
AGCTTTTTCA AAGAATCTAA AGCTGAAGAA ACGCCCAAGG TACTTAAGAA 
200
GAGAGGAAGG AAGAAGAAGA ATCCTAATCC CGAGGAAGTA AACTCTTCAA 
250
CTCCCGGTGG AGATGACTCA GAGAACCGCT CAAAGTTCTA CGAGAGTGCT 
300
TCTGCTAGAA AGAGAACTGT AACTGCAGAG GAAAGAGAGA GAGCCGTCAA 
350
TGCAGCCAAA ACATTCGAAC CAACAAATCC TTACTTTAGA GTTGTTCTGC 
400
GACCATCATA TCTATACAGA GGTTGCATCA TGTACTTGCC ATCTGGGTTT 
450
GCTGAGAAAT ACCTAAGTGG GATATCTGGT TTCATCAAGC TCCAGCTCGG 
500
TGAGAAACAA TGGCCAGTGA GGTGCCTCTA CAAAGCAGGG AGAGCTAAGT 
550
TTAGCCAAGG ATGGTATGAG TTCACACTCG AGAACAATAT AGGCGAAGGA 
600
GATGTATGTG TGTTTGAGCT ACTCAGAACT CGGGATTTCG TTCTCGAAGT 
650
CACCGCCTTT CGTGTCAATG AGTATGTGTG A
700

>AT1G49480.1 longest ORF length:226
MQMDSAQNQF NKRARLFEDP ELKDAKVIYP SNPESTEPVN KGYGGSTAIQ 
50
SFFKESKAEE TPKVLKKRGR KKKNPNPEEV NSSTPGGDDS ENRSKFYESA 
100
SARKRTVTAE ERERAVNAAK TFEPTNPYFR VVLRPSYLYR GCIMYLPSGF 
150
AEKYLSGISG FIKLQLGEKQ WPVRCLYKAG RAKFSQGWYE FTLENNIGEG 
200
DVCVFELLRT RDFVLEVTAF RVNEYV
250