Locus |
Common name |
Short description |
AT1G49480 |
REM19, RTV1 |
related to vernalization1 1 (.1) |
>AT1G49480.1 CDS map
>>Show genomic map
Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, HpaI, KpnI, NcoI, NdeI, NheI, NotI, PacI, PvuII, SacI, SalI, SmaI, SpeI, XbaI
Name |
Recognition sequence |
Cut positions |
EcoRV
| GAT|ATC |
471 |
HindIII
| A|AGCTT |
150 |
PstI
| CTGCA|G |
323 |
StyI
| C|C[AT][AT]GG |
185, 555 |
XhoI
| C|TCGAG |
577 |
Click here to view TAIR data
>AT1G49480.1 length:681
ATGCAAATGG ATTCCGCACA GAATCAGTTC AACAAACGTG CTCGATTGTT | 50 |
TGAAGATCCT GAACTCAAAG ATGCTAAGGT CATTTATCCA TCGAACCCTG | 100 |
AATCTACTGA ACCAGTGAAT AAAGGTTATG GCGGTTCTAC AGCCATCCAA | 150 |
AGCTTTTTCA AAGAATCTAA AGCTGAAGAA ACGCCCAAGG TACTTAAGAA | 200 |
GAGAGGAAGG AAGAAGAAGA ATCCTAATCC CGAGGAAGTA AACTCTTCAA | 250 |
CTCCCGGTGG AGATGACTCA GAGAACCGCT CAAAGTTCTA CGAGAGTGCT | 300 |
TCTGCTAGAA AGAGAACTGT AACTGCAGAG GAAAGAGAGA GAGCCGTCAA | 350 |
TGCAGCCAAA ACATTCGAAC CAACAAATCC TTACTTTAGA GTTGTTCTGC | 400 |
GACCATCATA TCTATACAGA GGTTGCATCA TGTACTTGCC ATCTGGGTTT | 450 |
GCTGAGAAAT ACCTAAGTGG GATATCTGGT TTCATCAAGC TCCAGCTCGG | 500 |
TGAGAAACAA TGGCCAGTGA GGTGCCTCTA CAAAGCAGGG AGAGCTAAGT | 550 |
TTAGCCAAGG ATGGTATGAG TTCACACTCG AGAACAATAT AGGCGAAGGA | 600 |
GATGTATGTG TGTTTGAGCT ACTCAGAACT CGGGATTTCG TTCTCGAAGT | 650 |
CACCGCCTTT CGTGTCAATG AGTATGTGTG A | 700 |
>AT1G49480.1 longest ORF length:226
MQMDSAQNQF NKRARLFEDP ELKDAKVIYP SNPESTEPVN KGYGGSTAIQ | 50 |
SFFKESKAEE TPKVLKKRGR KKKNPNPEEV NSSTPGGDDS ENRSKFYESA | 100 |
SARKRTVTAE ERERAVNAAK TFEPTNPYFR VVLRPSYLYR GCIMYLPSGF | 150 |
AEKYLSGISG FIKLQLGEKQ WPVRCLYKAG RAKFSQGWYE FTLENNIGEG | 200 |
DVCVFELLRT RDFVLEVTAF RVNEYV | 250 |
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