|
|
|
|
|
|
|
|
| Locus | Common name | Short description |
| AT1G49900 | C2H2 type zinc finger transcription factor family (.1) |
>AT1G49900.1 CDS map
>>Show genomic map
Uncut enzymes: ApaI, AscI, BamHI, EcoRI, HpaI, KpnI, NcoI, NdeI, PacI, PvuII, SacI, SalI, SmaI, SpeI
| Name | Recognition sequence | Cut positions |
| BglII | A|GATCT | 138, 1164 |
| EcoRV | GAT|ATC | 415 |
| HindIII | A|AGCTT | 40, 617, 2288, 2683 |
| NheI | G|CTAGC | 637, 2308 |
| NotI | GC|GGCCGC | 485 |
| PstI | CTGCA|G | 514 |
| StyI | C|C[AT][AT]GG | 226, 331, 777, 1029, 1618, 2514 |
| XbaI | T|CTAGA | 1201 |
| XhoI | C|TCGAG | 1186 |
Click here to view TAIR data
>AT1G49900.1 length:2754
ATGGATCTCA AGACGTTGAA TCAATTTTCG CCGTTGACAA AGCTTACCGT | 50 |
TCCAAATCAC AGAGATGTAC AAGTCAGGAC AGACCAGTTG ATAACTTACG | 100 |
AACGATCGAA ACGAAAGTCT TCTCTTCATG ATGATGAAGA TCTTATTTCG | 150 |
AAACGCCGAT GCTTAGATTT TCAGCGAAAA ATAGAAGACA ACGAGTGTGC | 200 |
AAACGACGGC GTTTTCGTTG CGCCTCCTAG GTTTAAAAGT GGTCAAGTGT | 250 |
CTATACGACA GCGTTCTGAC GCTCCTCTCT CTTCTCAGGC GGTGAAACAC | 300 |
GACGAGTTTG CAAACGATGC TTTCTACAAG CCTTGGTTGG ATAGTTTCCG | 350 |
GCTGAAACGA CAGCGTTTGG GTGACGATGA AGATCCTTCC TCTTCTTCTT | 400 |
CTCCATCTGA AGTTGATATC GCTGCTCTCA CTCTCTTACA GTTTTCCTGT | 450 |
GATAGACGCC ATCCGCAAAC ACAAACGCTA ACGCGGCCGC AGCCGCAAAC | 500 |
TCACAAAACT CAACTGCAGA GGCCGCCGCC GCAACTTCAA TCACAAACTC | 550 |
AAACGGCGCC TCCTAAGTCT GATTTGTTCA AGTGTAGCAT CTGTGAAAAA | 600 |
GTGTTTACTT CGTATCAAGC TTTAGGTGGT CACAAAGCTA GCCACAGTAT | 650 |
TAAGGCCGCG CAACTTGAAA ACGCAGGCGC AGACGCTGGA GAAAAAACGC | 700 |
GGTCAAAGAT GTTGTCACCG TCTGGGAAAA TCCACAAGTG TGATATATGT | 750 |
CATGTTCTGT TTCCCACCGG ACAAGCCCTA GGTGGACACA AACGCCGTCA | 800 |
CTACGAAGGC CTTCTCGGCG GTCACAAACG CGGTAATGAC GAGGCTGTTC | 850 |
TCAAGTTGAG TCCCAATAGC AATAAGAGCG TTGTAACAAA AGTGTTAGAT | 900 |
GCAGAACAGA GTTTAAGGGC AAGTGACAAC ATTCACAAAC GCAATCAGGA | 950 |
CGAGGTTGTT CCCAGCAGAG ACAAGTGGAG TCTCAGTAAT GTGAGTGTTG | 1000 |
TTAAAAATGT GTTGGATCTA AAGCTGAGCC TAGGGGAAAG TGACGGCGGT | 1050 |
CACAAAGACA GTCAGGACGA GGTTGTTGTT CATGAAGACA AGTGTAGTCC | 1100 |
TAGTAGCAAT GGGAGTATTG TAACAAATGT GTCCGATCCA GAGCAGAGCG | 1150 |
TAAGGAGATT GATAGATCTT AATAACCCGC CTTCACTCGA GTTTGATCAA | 1200 |
TCTAGAGGCG GAGACGTGGA GGAAGTTGAA AAAGAGGTAG TATTGGCTCT | 1250 |
TTCATCACAG ATGAAACAAC CGTCTAAGGA TGTGTCCGCT CTGATCAAAC | 1300 |
GATTAGAATT TGCGATGCAA GAAAGAAAAG ATGGGTTACT AGCCGACGAC | 1350 |
AATGTTTTGA TTGAGATGAT AATGGAACTT GAAGGGAATA TTTCTACTAC | 1400 |
TAATGGTGAT GATGAAGATC CTTATTCAGA AGGCAGGTTA ATAAAAGTGA | 1450 |
TAGAACCGAT CGGGCTAGAC GAAGACGATG AGTGTGTTGA GATTGGGTTG | 1500 |
GGGAGTTGTG AACAAGAGCC AATACAAGAG CGTTTTGGTG ATGATAAAGA | 1550 |
TCCTTCTTCG GATCACGGAA ACGTAGAATC TATCCGGCTA GAAGAAGAAG | 1600 |
ACGCCGTTTT GTTTGAGCCT TGGTTGAAAA GCAGGTTGAA AAGCAGGGAC | 1650 |
AGGGAACAGT CTCAACGACA AGGTTTTGGT GAATACGAAG ATTGTTTCTC | 1700 |
GGAACGCAGG TTCTTACAAG AAGAAGAAGA AGAGTGTTTT GGTGACGATG | 1750 |
AAGATTCTTT CTCGGATCAG ATTTCATTCT TGGAATCGAA CCGGCTAGAA | 1800 |
GAAGAATTTG AAGAAGAGAA AGAAGCAGCC CGGTTTTCAA ACGACAACGA | 1850 |
TTTCGTTGAG CTTTTGTTTC AAGGTATTGA ACAATCAAAA TCAAAACCAA | 1900 |
AGCCAAAGTC TTGTTCTTAT TATGATGATG ATGATGATGA TGATGATGAT | 1950 |
GGTGATGAGG ATGATGATGA TGATGATGAT GATGTTGATC CTTCCTCCAA | 2000 |
AGACATACGT TTAGAAGAAG AAAACGAGTG TGAAAACAGA GCCGTTATTA | 2050 |
GGCCTAGCTT GAATAGTGTA GCACCAAATC AACAGCGTTT TGGTGATGAT | 2100 |
GAAGTTCCTT CTTCTTCTTC TTCTCTCTCC AAAGATGAAA CCGCTGCTCT | 2150 |
CTGTCCCACA CCGCATTCAC AAACACAACC GCAATCGCAA ACCCAACTGC | 2200 |
AAAAGGTGAC CCAACCTCAA ACGCAGATGC TGCCTAAGTC TGATTCTTAC | 2250 |
CAGTGCAACG TCTGTGGAAG AGAGTTGCCT TCATATCAAG CTTTAGGTGG | 2300 |
TCACAAGGCT AGCCACAGGA CTAAGCCGCC TGTTGAAAAC GCAACTGGGG | 2350 |
AAAAAATGCG GCCAAAGAAG TTGGCCCCAT CTGGGAAAAT CCACAAGTGT | 2400 |
TCTATTTGTC ACCGAGAGTT TTCAACGGGA CAATCCCTCG GTGGACACAA | 2450 |
ACGCCTTCAT TACGAAGGAG TTCTCCGCGG TCACAAACGC AGCCAGGAGA | 2500 |
AGGAGGCTGT TTCCCAAGGA GACAAGTTGA GTCCTAGTGG TAATGGGAGT | 2550 |
GTTGTAACAC ATGTACCTGA CCCAAAGCAG AGCCGAAAGG GATTGATAGT | 2600 |
TATTAATAAA GTGCCATCGC CGGAGTTTAA TGATCCCGGC GACAAAGACA | 2650 |
TATTGGAGGG TGAAAGTGCA TTGTTAGCAA ACAAGCTTGA ACAAGATAGA | 2700 |
GGAATTACCA GTACTCGCAT GATTAACGGT TTGAAATTTT TTAACTTTCT | 2750 |
GTAA | 2800 |
>AT1G49900.1 longest ORF length:917
MDLKTLNQFS PLTKLTVPNH RDVQVRTDQL ITYERSKRKS SLHDDEDLIS | 50 |
KRRCLDFQRK IEDNECANDG VFVAPPRFKS GQVSIRQRSD APLSSQAVKH | 100 |
DEFANDAFYK PWLDSFRLKR QRLGDDEDPS SSSSPSEVDI AALTLLQFSC | 150 |
DRRHPQTQTL TRPQPQTHKT QLQRPPPQLQ SQTQTAPPKS DLFKCSICEK | 200 |
VFTSYQALGG HKASHSIKAA QLENAGADAG EKTRSKMLSP SGKIHKCDIC | 250 |
HVLFPTGQAL GGHKRRHYEG LLGGHKRGND EAVLKLSPNS NKSVVTKVLD | 300 |
AEQSLRASDN IHKRNQDEVV PSRDKWSLSN VSVVKNVLDL KLSLGESDGG | 350 |
HKDSQDEVVV HEDKCSPSSN GSIVTNVSDP EQSVRRLIDL NNPPSLEFDQ | 400 |
SRGGDVEEVE KEVVLALSSQ MKQPSKDVSA LIKRLEFAMQ ERKDGLLADD | 450 |
NVLIEMIMEL EGNISTTNGD DEDPYSEGRL IKVIEPIGLD EDDECVEIGL | 500 |
GSCEQEPIQE RFGDDKDPSS DHGNVESIRL EEEDAVLFEP WLKSRLKSRD | 550 |
REQSQRQGFG EYEDCFSERR FLQEEEEECF GDDEDSFSDQ ISFLESNRLE | 600 |
EEFEEEKEAA RFSNDNDFVE LLFQGIEQSK SKPKPKSCSY YDDDDDDDDD | 650 |
GDEDDDDDDD DVDPSSKDIR LEEENECENR AVIRPSLNSV APNQQRFGDD | 700 |
EVPSSSSSLS KDETAALCPT PHSQTQPQSQ TQLQKVTQPQ TQMLPKSDSY | 750 |
QCNVCGRELP SYQALGGHKA SHRTKPPVEN ATGEKMRPKK LAPSGKIHKC | 800 |
SICHREFSTG QSLGGHKRLH YEGVLRGHKR SQEKEAVSQG DKLSPSGNGS | 850 |
VVTHVPDPKQ SRKGLIVINK VPSPEFNDPG DKDILEGESA LLANKLEQDR | 900 |
GITSTRMING LKFFNFL | 950 |