fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G49950 ATTRB1, TRB1 telomere repeat binding factor 1 (.1.2.3)

>AT1G49950.3 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRV, HpaI, KpnI, NdeI, NheI, NotI, PacI, PstI, PvuII, SacI, SalI, SmaI, SpeI, XbaI, XhoI
Name Recognition sequence Cut positions
EcoRI G|AATTC 545
HindIII A|AGCTT 833, 848
NcoI C|CATGG 767
StyI C|C[AT][AT]GG 340, 767


Click here to view TAIR data

>AT1G49950.3 length:903
ATGGGTGCTC CTAAGCAGAA ATGGACTCAA GAAGAAGAGT CAGCTTTAAA 
50
GTCTGGAGTT ATAAAGCATG GACCTGGTAA ATGGCGCACA ATTCTCAAAG 
100
ATCCTGAATT TAGCGGAGTC TTGTACCTGC GTTCCAATGT TGATCTTAAG 
150
GACAAATGGA GAAACATGAG TGTCATGGCA AATGGCTGGG GATCGCGCGA 
200
AAAGTCTAGG TTAGCTGTTA AAAGGACGTT CTCCCTTCCT AAACAGGAAG 
250
AGAACTCACT AGCCCTAACC AATTCTTTGC AAAGTGATGA AGAAAATGTG 
300
GATGCGACCT CTGGACTCCA AGTTTCTTCT AATCCTCCTC CAAGGAGACC 
350
TAATGTAAGG TTGGATAGCC TTATAATGGA AGCAATAGCT ACCCTGAAAG 
400
AACCTGGTGG CTGTAACAAA ACAACAATTG GTGCCTACAT TGAGGATCAA 
450
TATCATGCTC CACCAGACTT CAAACGCTTG TTGTCTACCA AGCTAAAGTA 
500
CTTGACATCT TGCGGGAAAC TTGTGAAGGT TAAACGTAAG TACAGAATTC 
550
CAAACTCCAC TCCCTTGTCT TCCCACAGGA GAAAAGGTCT GGGGGTGTTT 
600
GGAGGAAAAC AGAGGACTTC TTCTTTGCCT TCACCTAAAA CAGACATAGA 
650
TGAAGTGAAT TTTCAGACAA GGTCACAGAT TGATACAGAG ATAGCCAGAA 
700
TGAAGAGTAT GAACGTACAT GAGGCGGCAG CAGTTGCAGC ACAGGCAGTA 
750
GCAGAGGCAG AAGCTGCCAT GGCAGAGGCT GAGGAAGCTG CAAAGGAAGC 
800
GGAGGCAGCA GAAGCCGAAG CAGAAGCAGC TCAAGCTTTC GCTGAGGAAG 
850
CTTCAAAGAC ATTGAAAGGA AGAAACATCT GCAAAATGAT GATCCGTGCC 
900
TGA
950

>AT1G49950.3 longest ORF length:300
MGAPKQKWTQ EEESALKSGV IKHGPGKWRT ILKDPEFSGV LYLRSNVDLK 
50
DKWRNMSVMA NGWGSREKSR LAVKRTFSLP KQEENSLALT NSLQSDEENV 
100
DATSGLQVSS NPPPRRPNVR LDSLIMEAIA TLKEPGGCNK TTIGAYIEDQ 
150
YHAPPDFKRL LSTKLKYLTS CGKLVKVKRK YRIPNSTPLS SHRRKGLGVF 
200
GGKQRTSSLP SPKTDIDEVN FQTRSQIDTE IARMKSMNVH EAAAVAAQAV 
250
AEAEAAMAEA EEAAKEAEAA EAEAEAAQAF AEEASKTLKG RNICKMMIRA 
300