fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G50420 SCL-3, SCL3 scarecrow-like 3 (.1)

>AT1G50420.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, EcoRI, HpaI, KpnI, NdeI, NheI, NotI, PacI, SacI, SalI, SmaI, SpeI, XbaI
Name Recognition sequence Cut positions
BglII A|GATCT 129
EcoRV GAT|ATC 664
HindIII A|AGCTT 548, 1246
NcoI C|CATGG 879
PstI CTGCA|G 887
PvuII CAG|CTG 890
StyI C|C[AT][AT]GG 879
XhoI C|TCGAG 229, 466


Click here to view TAIR data

>AT1G50420.1 length:1449
ATGGTGGCTA TGTTTCAAGA AGATAATGGA ACATCTTCTG TAGCTTCATC 
50
ACCACTTCAA GTCTTCTCAA CTATGTCACT CAACAGACCG ACTCTCCTCG 
100
CTTCTTCATC TCCGTTTCAT TGTCTCAAAG ATCTCAAACC AGAGGAGCGT 
150
GGTCTCTACT TAATCCACCT CTTGCTAACT TGTGCCAACC ACGTGGCTTC 
200
AGGTAGCCTC CAAAACGCTA ACGCAGCGCT CGAGCAGCTC TCTCACCTCG 
250
CTTCTCCTGA CGGCGACACG ATGCAGCGAA TCGCTGCTTA CTTCACCGAA 
300
GCGCTTGCTA ACAGAATCCT TAAGTCCTGG CCTGGTCTTT ACAAGGCTCT 
350
TAACGCAACT CAGACAAGAA CTAACAATGT CTCTGAGGAG ATTCATGTTA 
400
GAAGACTCTT CTTTGAGATG TTCCCGATAC TCAAAGTCTC TTACTTGCTC 
450
ACTAATCGAG CTATACTCGA GGCTATGGAA GGAGAGAAGA TGGTTCATGT 
500
GATTGATCTC GATGCTTCTG AGCCAGCTCA ATGGCTTGCT TTGCTTCAAG 
550
CTTTTAACTC TAGGCCTGAA GGTCCACCTC ATTTGAGAAT CACTGGTGTT 
600
CATCACCAGA AGGAAGTGCT TGAACAAATG GCTCATAGAC TCATTGAGGA 
650
AGCAGAGAAA CTCGATATCC CGTTTCAGTT TAATCCCGTT GTGAGTAGGT 
700
TAGACTGTTT AAATGTAGAA CAGTTGCGGG TTAAAACAGG AGAGGCCTTA 
750
GCCGTTAGCT CGGTTCTTCA ATTGCATACC TTCTTGGCCT CTGATGATGA 
800
TCTCATGAGA AAGAACTGCG CTTTACGGTT TCAGAACAAC CCTAGTGGAG 
850
TTGACTTGCA GAGAGTTCTA ATGATGAGCC ATGGCTCTGC AGCTGAGGCA 
900
CGTGAGAATG ATATGAGTAA CAACAATGGG TATAGCCCTA GCGGTGACTC 
950
GGCCTCATCT TTGCCTTTAC CAAGTTCAGG AAGGACTGAT AGCTTCCTCA 
1000
ATGCTATTTG GGGTTTGTCT CCAAAGGTCA TGGTGGTCAC TGAGCAAGAC 
1050
TCAGACCACA ACGGCTCCAC ACTAATGGAG AGGCTATTAG AATCACTTTA 
1100
CACCTACGCA GCATTGTTTG ATTGCTTGGA AACAAAAGTT CCAAGAACGT 
1150
CTCAAGATAG GATCAAAGTG GAGAAGATGC TCTTCGGGGA GGAGATCAAG 
1200
AACATCATAT CCTGCGAGGG ATTTGAGAGA AGAGAAAGAC ACGAGAAGCT 
1250
TGAGAAATGG AGCCAGAGGA TCGATTTGGC TGGTTTTGGG AATGTTCCTC 
1300
TTAGCTATTA TGCGATGTTG CAGGCTAGGA GATTGCTTCA AGGGTGCGGT 
1350
TTTGATGGGT ATAGAATCAA GGAAGAGAGC GGGTGCGCAG TAATTTGCTG 
1400
GCAAGATCGA CCTCTATACT CGGTATCAGC TTGGAGATGC AGGAAGTGA
1450

>AT1G50420.1 longest ORF length:482
MVAMFQEDNG TSSVASSPLQ VFSTMSLNRP TLLASSSPFH CLKDLKPEER 
50
GLYLIHLLLT CANHVASGSL QNANAALEQL SHLASPDGDT MQRIAAYFTE 
100
ALANRILKSW PGLYKALNAT QTRTNNVSEE IHVRRLFFEM FPILKVSYLL 
150
TNRAILEAME GEKMVHVIDL DASEPAQWLA LLQAFNSRPE GPPHLRITGV 
200
HHQKEVLEQM AHRLIEEAEK LDIPFQFNPV VSRLDCLNVE QLRVKTGEAL 
250
AVSSVLQLHT FLASDDDLMR KNCALRFQNN PSGVDLQRVL MMSHGSAAEA 
300
RENDMSNNNG YSPSGDSASS LPLPSSGRTD SFLNAIWGLS PKVMVVTEQD 
350
SDHNGSTLME RLLESLYTYA ALFDCLETKV PRTSQDRIKV EKMLFGEEIK 
400
NIISCEGFER RERHEKLEKW SQRIDLAGFG NVPLSYYAML QARRLLQGCG 
450
FDGYRIKEES GCAVICWQDR PLYSVSAWRC RK
500