fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G52880 ATNAM, NAM, ANAC018, NARS2 NAC-REGULATED SEED MORPHOLOGY 2, Arabidopsis NAC domain containing protein 18, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1)

>AT1G52880.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, EcoRV, KpnI, NdeI, NheI, NotI, PacI, PstI, PvuII, SacI, SalI, SmaI, XhoI
Name Recognition sequence Cut positions
HindIII A|AGCTT 194
HpaI GTT|AAC 435
NcoI C|CATGG 175
SpeI A|CTAGT 802
StyI C|C[AT][AT]GG 175, 918
XbaI T|CTAGA 547, 579


Click here to view TAIR data

>AT1G52880.1 length:963
ATGGAGAGTA CAGATTCTTC CGGTGGTCCT CCGCCGCCGC AACCAAACCT 
50
CCCTCCAGGA TTCCGGTTTC ATCCAACAGA CGAAGAACTT GTAATTCATT 
100
ACCTCAAACG CAAAGCAGAT TCTGTTCCTT TACCAGTCGC GATCATCGCC 
150
GACGTTGATC TTTACAAATT TGATCCATGG GAACTTCCCG CGAAAGCTTC 
200
GTTTGGAGAA CAAGAATGGT ATTTTTTCAG TCCAAGAGAT CGGAAATATC 
250
CCAACGGAGC TAGACCTAAC CGAGCTGCGA CTTCCGGTTA TTGGAAAGCG 
300
ACTGGTACAG ATAAACCGGT GATTTCAACC GGCGGTGGTG GTAGTAAAAA 
350
AGTGGGAGTT AAAAAGGCTC TAGTGTTTTA CAGTGGTAAA CCACCAAAAG 
400
GAGTTAAATC AGATTGGATT ATGCATGAAT ATCGGTTAAC TGATAATAAA 
450
CCTACTCATA TTTGTGACTT CGGCAACAAG AAAAACTCTC TCAGGCTTGA 
500
TGATTGGGTG TTGTGTCGTA TCTACAAGAA AAACAATAGT ACAGCATCTA 
550
GACATCATCA TCATCTTCAT CATATTCATC TAGATAATGA TCATCATCGT 
600
CATGATATGA TGATTGATGA TGATCGATTC CGTCATGTTC CTCCTGGTCT 
650
TCACTTCCCG GCGATTTTTT CTGACAATAA TGATCCGACG GCTATATATG 
700
ATGGTGGCGG CGGCGGATAC GGAGGTGGAA GTTACTCGAT GAATCATTGT 
750
TTCGCATCTG GATCAAAGCA GGAGCAGTTG TTTCCACCGG TGATGATGAT 
800
GACTAGTCTA AATCAAGATT CCGGTATTGG ATCGTCGTCG TCACCTAGCA 
850
AGAGATTTAA CGGCGGCGGC GTTGGAGATT GTTCGACTTC TATGGCGGCG 
900
ACGCCGTTAA TGCAGAACCA AGGTGGGATT TACCAATTGC CTGGTTTGAA 
950
TTGGTATTCT TGA
1000

>AT1G52880.1 longest ORF length:320
MESTDSSGGP PPPQPNLPPG FRFHPTDEEL VIHYLKRKAD SVPLPVAIIA 
50
DVDLYKFDPW ELPAKASFGE QEWYFFSPRD RKYPNGARPN RAATSGYWKA 
100
TGTDKPVIST GGGGSKKVGV KKALVFYSGK PPKGVKSDWI MHEYRLTDNK 
150
PTHICDFGNK KNSLRLDDWV LCRIYKKNNS TASRHHHHLH HIHLDNDHHR 
200
HDMMIDDDRF RHVPPGLHFP AIFSDNNDPT AIYDGGGGGY GGGSYSMNHC 
250
FASGSKQEQL FPPVMMMTSL NQDSGIGSSS SPSKRFNGGG VGDCSTSMAA 
300
TPLMQNQGGI YQLPGLNWYS 
350