Locus |
Common name |
Short description |
AT1G52880 |
ATNAM, NAM, ANAC018, NARS2 |
NAC-REGULATED SEED MORPHOLOGY 2, Arabidopsis NAC domain containing protein 18, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) |
>AT1G52880.1 CDS map
>>Show genomic map
Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, EcoRV, KpnI, NdeI, NheI, NotI, PacI, PstI, PvuII, SacI, SalI, SmaI, XhoI
Name |
Recognition sequence |
Cut positions |
HindIII
| A|AGCTT |
194 |
HpaI
| GTT|AAC |
435 |
NcoI
| C|CATGG |
175 |
SpeI
| A|CTAGT |
802 |
StyI
| C|C[AT][AT]GG |
175, 918 |
XbaI
| T|CTAGA |
547, 579 |
Click here to view TAIR data
>AT1G52880.1 length:963
ATGGAGAGTA CAGATTCTTC CGGTGGTCCT CCGCCGCCGC AACCAAACCT | 50 |
CCCTCCAGGA TTCCGGTTTC ATCCAACAGA CGAAGAACTT GTAATTCATT | 100 |
ACCTCAAACG CAAAGCAGAT TCTGTTCCTT TACCAGTCGC GATCATCGCC | 150 |
GACGTTGATC TTTACAAATT TGATCCATGG GAACTTCCCG CGAAAGCTTC | 200 |
GTTTGGAGAA CAAGAATGGT ATTTTTTCAG TCCAAGAGAT CGGAAATATC | 250 |
CCAACGGAGC TAGACCTAAC CGAGCTGCGA CTTCCGGTTA TTGGAAAGCG | 300 |
ACTGGTACAG ATAAACCGGT GATTTCAACC GGCGGTGGTG GTAGTAAAAA | 350 |
AGTGGGAGTT AAAAAGGCTC TAGTGTTTTA CAGTGGTAAA CCACCAAAAG | 400 |
GAGTTAAATC AGATTGGATT ATGCATGAAT ATCGGTTAAC TGATAATAAA | 450 |
CCTACTCATA TTTGTGACTT CGGCAACAAG AAAAACTCTC TCAGGCTTGA | 500 |
TGATTGGGTG TTGTGTCGTA TCTACAAGAA AAACAATAGT ACAGCATCTA | 550 |
GACATCATCA TCATCTTCAT CATATTCATC TAGATAATGA TCATCATCGT | 600 |
CATGATATGA TGATTGATGA TGATCGATTC CGTCATGTTC CTCCTGGTCT | 650 |
TCACTTCCCG GCGATTTTTT CTGACAATAA TGATCCGACG GCTATATATG | 700 |
ATGGTGGCGG CGGCGGATAC GGAGGTGGAA GTTACTCGAT GAATCATTGT | 750 |
TTCGCATCTG GATCAAAGCA GGAGCAGTTG TTTCCACCGG TGATGATGAT | 800 |
GACTAGTCTA AATCAAGATT CCGGTATTGG ATCGTCGTCG TCACCTAGCA | 850 |
AGAGATTTAA CGGCGGCGGC GTTGGAGATT GTTCGACTTC TATGGCGGCG | 900 |
ACGCCGTTAA TGCAGAACCA AGGTGGGATT TACCAATTGC CTGGTTTGAA | 950 |
TTGGTATTCT TGA | 1000 |
>AT1G52880.1 longest ORF length:320
MESTDSSGGP PPPQPNLPPG FRFHPTDEEL VIHYLKRKAD SVPLPVAIIA | 50 |
DVDLYKFDPW ELPAKASFGE QEWYFFSPRD RKYPNGARPN RAATSGYWKA | 100 |
TGTDKPVIST GGGGSKKVGV KKALVFYSGK PPKGVKSDWI MHEYRLTDNK | 150 |
PTHICDFGNK KNSLRLDDWV LCRIYKKNNS TASRHHHHLH HIHLDNDHHR | 200 |
HDMMIDDDRF RHVPPGLHFP AIFSDNNDPT AIYDGGGGGY GGGSYSMNHC | 250 |
FASGSKQEQL FPPVMMMTSL NQDSGIGSSS SPSKRFNGGG VGDCSTSMAA | 300 |
TPLMQNQGGI YQLPGLNWYS | 350 |
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