|
|
|
|
|
|
|
|
| Locus | Common name | Short description |
| AT1G52890 | ANAC019 | NAC domain containing protein 19 (.1) |
>AT1G52890.1 CDS map
>>Show genomic map
Uncut enzymes: AccI, AccIII(BspMII), AclI, AfeI, AflII, AflIII, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, AscI, AseI, AvaII, BaeI, BalI, BamHI, BanII, BbsI, BbvCI, BbvI, BcgI, BciVI, BclI, BglI, BlpI, BmrI, BpmI, BsaAI, BsaBI, BsaI, BsaXI, BseRI, BsgI, BsiWI, BsmAI, BsmBI, BsmFI, BspDI, BspEI, BspHI, BspMI, BsrBI, BsrDI, BsrGI, BsrI, BssHII, BssSI, BstAPI, BstBI, BstEII, BstNI, BstXI, BstZ17I, Bsu36I, BtrI, BtsI, Cac8I, ClaI, DraI, DraIII, DrdI, EaeI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRV, FauI, FokI, FseI, FspI, HaeII, HaeIII, HgaI, HhaI, HinP1I, HphI, I-CeuI, I-SceI, KasI, MboII, MluI, MlyI, MnlI, MscI, MslI, NaeI, , NarI, NdeI, NgoMIV, NheI, NotI, NspI, PI-PspI, PI-SceI(VDE), PacI, PciI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspGI, PspOMI, PstI, PvuI, RsrII, SacI, SacII, SalI, SapI, Sau96I, SbfI, ScaI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SpeI, SphI, SspI, StuI, SwaI, TspRI, XbaI, XcmI, XmaI
| Name | Recognition sequence | Cut positions |
| AatII | GACGT|C | 567 |
| Acc65I | G|GTACC | 771 |
| AccII(FnuDII) | CG|CG | 523 |
| AciI | C|CGC | 652 |
| AluI | AG|CT | 75, 106, 129, 286, 343, 367, 883 |
| ApaLI | G|TGCAC | 494 |
| ApoI | Pu|AATTPy | 157, 538, 630 |
| AvaI | C|PyCGPuG | 808, 873 |
| AvrII | C|CTAGG | 223 |
| BanI | G|GPyPuCC | 771 |
| BfaI | C|TAG | 222, 531, 735 |
| BglII | A|GATCT | 147 |
| BsaHI | GPu|CGPyC | 567 |
| BsaJI | C|CNNGG | 166, 223, 702 |
| BsaWI | [AT]|CCGG[AT] | 672, 774 |
| BsiEI | CGPuPy|CG | 65 |
| BsiHKAI | G[AT]GC[AT]|C | 494 |
| BslI | CCNNNNN|NNGG | 780, 833 |
| BsmI | GAATGCN| | 529 |
| BsoBI | C|PyCGPuG | 808, 873 |
| Bsp1286I | G[GAT]GC[CAT]|C | 494 |
| BspT107I(HgiCI) | G|G[TC][AG]CC | 771 |
| BsrFI | Pu|CCGGPy | 745 |
| BssKI | |CCNGG | 45, 260, 694 |
| BstF5I | GGATGNN| | 454 |
| BstUI | CG|CG | 523 |
| BstYI | Pu|GATCPy | 147 |
| BtgI | C|CPuPyGG | 166, 702 |
| Cfr10I | [AG]|CCGG[TC] | 745 |
| DdeI | C|TNAG | 445, 666 |
| DpnI | GA-CH3|TC | 146, 161, 270, 394, 616 |
| DpnII | |GATC | 146, 161, 270, 394, 616 |
| EcoRI | G|AATTC | 538 |
| Fnu4HI | GC|NGC | 105 |
| HincII | GTPy|PuAC | 24, 904 |
| HindIII | A|AGCTT | 344 |
| HinfI | G|ANTC | 520, 600, 788, 906 |
| HpaI | GTT|AAC | 24 |
| HpaII | C|CGG | 44, 259, 267, 671, 693, 744, 773 |
| Hpy188I | TCN|GA | 52, 361, 667, 781 |
| Hpy99I | CG[AT]CG| | 313, 565, 661 |
| HpyCH4III | ACN|GT | 550, 703, 817 |
| HpyCH4IV | A|CGT | 566, 591 |
| HpyCH4V | TG|CA | 399, 493 |
| KpnI | GGTAC|C | 771 |
| MboI | |GATC | 146, 161, 270, 394, 616 |
| MfeI | C|AATTG | 31, 390 |
| MseI | T|TAA | 23, 336, 677, 864 |
| MspA1I | C[AC]G|C[GT]G | 107 |
| MspI | C|CGG | 44, 259, 267, 671, 693, 744, 773 |
| MwoI | GCNNNNN|NNGC | 741 |
| N.BstNBI | GAGTCNNNN|N | 793 |
| NciI | CC|[CG]GG | 45, 260, 694 |
| NcoI | C|CATGG | 166 |
| NlaIII | CATG| | 165, 397, 401, 791 |
| NlaIV | GGN|NCC | 698, 771 |
| NruI | TCG|CGA | 524 |
| NsiI | ATGCA|T | 400 |
| PaeR7I | C|TCGAG | 808 |
| PflFI | GACN|NNGTC | 570 |
| PvuII | CAG|CTG | 107 |
| RsaI | GT|AC | 294, 378, 552, 770, 811 |
| Sau3AI | |GATC | 146, 161, 270, 394, 616 |
| ScrFI | CC|NGG | 45, 260, 694 |
| SfcI | C|TPuPyAG | 96 |
| SmlI | C|TPyPuAG | 808 |
| StyI | C|C[AT][AT]GG | 166, 223 |
| Taqƒ¿I | T|CGA | 159, 311, 469, 618, 726, 807, 846 |
| TfiI | G|A[AT]TC | 520, 600 |
| TliI | C|TCGAG | 808 |
| TseI | G|C[AT]GC | 105 |
| Tsp45I | |GT[CG]AC | 856 |
| Tsp509I | |AATT | 30, 156, 389, 537, 629 |
| Tth111I | GACN|NNGTC | 570 |
| XhoI | C|TCGAG | 808 |
| XmnI | GAANN|NNTTC | 593 |
Click here to view TAIR data
>AT1G52890.1 length:954
ATGGGTATCC AAGAAACTGA CCCGTTAACG CAATTGAGTT TACCACCGGG | 50 |
TTTCCGATTT TACCCGACCG ATGAAGAGCT TATGGTTCAA TATCTCTGTA | 100 |
GAAAAGCAGC TGGTTACGAT TTCTCTCTTC AGCTCATCGC CGAAATAGAT | 150 |
CTTTACAAAT TCGATCCATG GGTTTTACCA AATAAAGCAT TATTTGGAGA | 200 |
AAAAGAATGG TATTTTTTTA GTCCTAGGGA TAGAAAATAT CCAAACGGGT | 250 |
CAAGACCTAA CCGGGTTGCC GGATCGGGTT ATTGGAAAGC TACGGGTACG | 300 |
GATAAAATAA TCTCGACGGA AGGACAAAGA GTTGGTATTA AAAAAGCTTT | 350 |
GGTGTTTTAC ATCGGAAAAG CTCCTAAAGG TACTAAAACC AATTGGATCA | 400 |
TGCATGAGTA TCGTCTCATT GAACCTTCTC GTAGAAACGG AAGCACTAAG | 450 |
TTGGATGATT GGGTTCTATG TCGAATATAC AAGAAGCAAT CAAGTGCACA | 500 |
AAAACAAGTT TACGATAATG GAATCGCGAA TGCTAGAGAA TTCAGCAACA | 550 |
ACGGTACTTC GTCCACGACG TCGTCTTCTT CTCACTTTGA AGACGTTCTT | 600 |
GATTCGTTTC ATCAAGAGAT CGACAACAGA AATTTCCAGT TTTCTAACCC | 650 |
AAACCGCATC TCGTCGCTCA GACCGGACTT AACCGAACAG AAAACCGGGT | 700 |
TCCACGGTCT TGCGGATACT TCTAACTTCG ATTGGGCTAG TTTTGCCGGT | 750 |
AATGTTGAGC ATAATAACTC GGTACCGGAA CTCGGAATGA GTCATGTTGT | 800 |
TCCTAATCTC GAGTACAACT GTGGCTACCT GAAGACGGAG GAGGAAGTCG | 850 |
AGAGCAGTCA CGGGTTTAAT AACTCGGGCG AGTTAGCTCA AAAGGGTTAT | 900 |
GGTGTTGACT CGTTTGGGTA TTCGGGGCAA GTTGGTGGGT TTGGGTTTAT | 950 |
GTGA | 1000 |
>AT1G52890.1 longest ORF length:317
MGIQETDPLT QLSLPPGFRF YPTDEELMVQ YLCRKAAGYD FSLQLIAEID | 50 |
LYKFDPWVLP NKALFGEKEW YFFSPRDRKY PNGSRPNRVA GSGYWKATGT | 100 |
DKIISTEGQR VGIKKALVFY IGKAPKGTKT NWIMHEYRLI EPSRRNGSTK | 150 |
LDDWVLCRIY KKQSSAQKQV YDNGIANARE FSNNGTSSTT SSSSHFEDVL | 200 |
DSFHQEIDNR NFQFSNPNRI SSLRPDLTEQ KTGFHGLADT SNFDWASFAG | 250 |
NVEHNNSVPE LGMSHVVPNL EYNCGYLKTE EEVESSHGFN NSGELAQKGY | 300 |
GVDSFGYSGQ VGGFGFM | 350 |