fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G53170 ATERF8, ATERF-8 ETHYLENE RESPONSE ELEMENT BINDING FACTOR 4, ethylene response factor 8 (.1)

>AT1G53170.1 CDS map

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Uncut enzymes: ApaI, AscI, BamHI, EcoRI, HindIII, HpaI, KpnI, NdeI, NheI, NotI, PacI, PstI, PvuII, SmaI, SpeI, XbaI
Name Recognition sequence Cut positions
BglII A|GATCT 522
EcoRV GAT|ATC 507
NcoI C|CATGG 14, 112
SacI GAGCT|C 346
SalI G|TCGAC 301
StyI C|C[AT][AT]GG 14, 112
XhoI C|TCGAG 158, 343


Click here to view TAIR data

>AT1G53170.1 length:558
ATGCCCAACA TCACCATGGG TTTGAAACCC GACCCGGTTG CTCCAACGAA 
50
CCCGACTCAT CATGAGAGTA ATGCTGCCAA AGAGATTCGT TACAGAGGCG 
100
TTAGGAAACG TCCATGGGGA AGATACGCCG CTGAGATCCG AGATCCGGTT 
150
AAGAAAACTC GAGTCTGGCT CGGTACGTTC GACACCGCTC AGCAGGCGGC 
200
GCGTGCTTAC GACGCAGCCG CGCGTGACTT TCGTGGTGTT AAGGCTAAGA 
250
CCAATTTCGG TGTTATCGTT GGTAGTAGTC CTACTCAGAG TAGCACCGTC 
300
GTCGACTCTC CCACGGCGGC ACGGTTTATA ACACCTCCGC ACCTCGAGCT 
350
CAGCTTAGGC GGCGGCGGCG CGTGTCGTCG TAAGATCCCG CTTGTGCATC 
400
CGGTTTACTA CTATAACATG GCGACGTATC CAAAGATGAC GACGTGTGGT 
450
GTCCAGAGCG AGTCTGAAAC GTCGTCGGTC GTTGATTTCG AAGGTGGAGC 
500
TGGGAAGATA TCTCCGCCGT TAGATCTGGA TCTTAACTTA GCTCCTCCGG 
550
CGGAATAG
600

>AT1G53170.1 longest ORF length:185
MPNITMGLKP DPVAPTNPTH HESNAAKEIR YRGVRKRPWG RYAAEIRDPV 
50
KKTRVWLGTF DTAQQAARAY DAAARDFRGV KAKTNFGVIV GSSPTQSSTV 
100
VDSPTAARFI TPPHLELSLG GGGACRRKIP LVHPVYYYNM ATYPKMTTCG 
150
VQSESETSSV VDFEGGAGKI SPPLDLDLNL APPAE
200