fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G53910 RAP2.12 related to AP2 12 (.1.2.3)

>AT1G53910.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, EcoRV, HindIII, HpaI, KpnI, NcoI, NdeI, NheI, NotI, PacI, SacI, SalI, SmaI, SpeI, XbaI, XhoI
Name Recognition sequence Cut positions
PstI CTGCA|G 497
PvuII CAG|CTG 467
StyI C|C[AT][AT]GG 168, 394, 427


Click here to view TAIR data

>AT1G53910.1 length:1077
ATGTGTGGAG GAGCTATAAT ATCCGATTTC ATTCCACCGC CGAGGTCTCG 
50
CCGTGTTACT AGCGAGTTTA TTTGGCCGGA TCTGAAGAAG AATTTGAAAG 
100
GATCGAAGAA AAGCTCGAAG AATCGTTCGA ATTTCTTCGA TTTTGACGCT 
150
GAGTTCGAAG CTGATTTCCA AGGTTTCAAA GATGATTCGT CTATCGATTG 
200
CGATGATGAT TTCGACGTCG GTGATGTTTT CGCCGATGTG AAACCATTCG 
250
TTTTCACTTC GACTCCAAAA CCCGCCGTCT CCGCCGCTGC GGAAGGTTCA 
300
GTTTTTGGTA AGAAAGTTAC TGGCTTGGAT GGGGACGCTG AGAAATCTGC 
350
AAATAGGAAG AGGAAGAATC AGTACCGAGG GATTAGGCAA CGTCCTTGGG 
400
GAAAATGGGC TGCTGAGATA CGTGATCCAA GGGAAGGTGC TAGAATCTGG 
450
CTTGGAACGT TCAAGACAGC TGAGGAAGCT GCTAGAGCTT ACGATGCTGC 
500
AGCGCGGAGA ATCCGTGGAT CTAAAGCTAA GGTGAATTTC CCTGAAGAAA 
550
ACATGAAGGC TAATTCTCAG AAACGCTCTG TGAAGGCTAA TCTTCAGAAA 
600
CCAGTGGCTA AACCTAACCC TAACCCAAGT CCAGCTTTGG TTCAGAACTC 
650
GAACATCTCC TTTGAAAATA TGTGTTTCAT GGAGGAGAAA CACCAAGTGA 
700
GCAACAACAA CAACAACCAG TTTGGGATGA CAAACTCCGT TGATGCTGGA 
750
TGTAATGGGT ATCAGTATTT CAGCTCTGAC CAGGGTAGTA ATTCTTTCGA 
800
TTGTTCGGAG TTTGGTTGGA GCGATCAAGC TCCGATAACT CCCGACATCT 
850
CTTCTGCGGT TATCAACAAC AACAACTCAG CTCTGTTCTT TGAGGAAGCC 
900
AATCCAGCTA AGAAGCTCAA GTCTATGGAT TTCGAGACAC CTTACAACAA 
950
CACTGAATGG GACGCTTCAC TGGATTTCCT CAACGAAGAT GCTGTAACGA 
1000
CTCAGGACAA TGGTGCAAAC CCTATGGACC TATGGAGTAT TGATGAAATT 
1050
CATTCCATGA TTGGAGGAGT CTTCTGA
1100

>AT1G53910.1 longest ORF length:358
MCGGAIISDF IPPPRSRRVT SEFIWPDLKK NLKGSKKSSK NRSNFFDFDA 
50
EFEADFQGFK DDSSIDCDDD FDVGDVFADV KPFVFTSTPK PAVSAAAEGS 
100
VFGKKVTGLD GDAEKSANRK RKNQYRGIRQ RPWGKWAAEI RDPREGARIW 
150
LGTFKTAEEA ARAYDAAARR IRGSKAKVNF PEENMKANSQ KRSVKANLQK 
200
PVAKPNPNPS PALVQNSNIS FENMCFMEEK HQVSNNNNNQ FGMTNSVDAG 
250
CNGYQYFSSD QGSNSFDCSE FGWSDQAPIT PDISSAVINN NNSALFFEEA 
300
NPAKKLKSMD FETPYNNTEW DASLDFLNED AVTTQDNGAN PMDLWSIDEI 
350
HSMIGGVF
400