fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G54330 ANAC020 NAC domain containing protein 20 (.1)

>AT1G54330.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, EcoRV, HindIII, HpaI, KpnI, NdeI, NheI, NotI, PacI, PstI, PvuII, SalI, SmaI, XbaI
Name Recognition sequence Cut positions
NcoI C|CATGG 142
SacI GAGCT|C 100
SpeI A|CTAGT 514
StyI C|C[AT][AT]GG 142
XhoI C|TCGAG 103


Click here to view TAIR data

>AT1G54330.1 length:906
ATGGCGCCCA TGAGTTTGCC TCCAGGATTC AGGTTTCATC CCACTGATGA 
50
AGAACTGGTG GCTTACTATC TTGATAGGAA GGTCAACGGC CAAGCCATTG 
100
AGCTCGAGAT CATCCCAGAA GTTGATCTTT ATAAATGCGA GCCATGGGAC 
150
TTGCCTGAAA AGTCATTTTT GCCGGGAAAC GACATGGAAT GGTACTTTTA 
200
CAGCACAAGG GATAAGAAGT ATCCAAATGG CTCTAGGACG AACCGTGCGA 
250
CCCGAGCGGG TTACTGGAAG GCCACGGGGA AAGATCGTAC AGTAGAATCA 
300
AAGAAGATGA AGATGGGAAT GAAGAAGACA CTGGTTTATT ATAGAGGAAG 
350
GGCTCCTCAT GGCCTTCGTA CTAATTGGGT CATGCATGAA TATCGTCTCA 
400
CGCACGCTCC TTCCTCCTCC TTGAAGGAGT CGTATGCATT GTGCCGAGTG 
450
TTTAAGAAGA ACATACAAAT TCCAAAGAGA AAAGGGGAAG AAGAAGAAGC 
500
AGAAGAAGAG AGCACTAGTG TAGGAAAAGA AGAGGAAGAA GAAAAGGAGA 
550
AGAAGTGGAG AAAATGTGAT GGTAATTATA TTGAAGACGA GAGCTTGAAA 
600
AGAGCATCCG CGGAGACATC TTCATCAGAG CTAACTCAAG GGGTCCTTTT 
650
AGACGAAGCA AACAGCTCAT CCATATTTGC TCTTCATTTC TCATCTTCTC 
700
TTCTGGACGA TCATGATCAT CTTTTCTCAA ACTATTCTCA TCAGCTTCCA 
750
TATCATCCTC CTCTTCAACT CCAAGATTTC CCTCAACTTT CTATGAACGA 
800
AGCAGAGATT ATGTCAATCC AACAAGACTT TCAATGCAGA GACTCTATGA 
850
ACGGGACACT TGACGAAATC TTCTCTTCTT CCGCCACTTT CCCCGCTTCC 
900
CTTTGA
950

>AT1G54330.1 longest ORF length:301
MAPMSLPPGF RFHPTDEELV AYYLDRKVNG QAIELEIIPE VDLYKCEPWD 
50
LPEKSFLPGN DMEWYFYSTR DKKYPNGSRT NRATRAGYWK ATGKDRTVES 
100
KKMKMGMKKT LVYYRGRAPH GLRTNWVMHE YRLTHAPSSS LKESYALCRV 
150
FKKNIQIPKR KGEEEEAEEE STSVGKEEEE EKEKKWRKCD GNYIEDESLK 
200
RASAETSSSE LTQGVLLDEA NSSSIFALHF SSSLLDDHDH LFSNYSHQLP 
250
YHPPLQLQDF PQLSMNEAEI MSIQQDFQCR DSMNGTLDEI FSSSATFPAS 
300
L
350