fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G54830 NF-YC3 "nuclear factor Y, subunit C3", nuclear factor Y, subunit C3 (.1.2.3)

>AT1G54830.2 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BglII, EcoRI, HindIII, HpaI, KpnI, NcoI, NdeI, NheI, NotI, PacI, PstI, SacI, SalI, SpeI, StyI, XbaI, XhoI
Name Recognition sequence Cut positions
BamHI G|GATCC 639
EcoRV GAT|ATC 382
PvuII CAG|CTG 494
SmaI CCC|GGG 549, 570


Click here to view TAIR data

>AT1G54830.2 length:654
ATGGATCAAC AAGGACAATC ATCAGCTATG AACTATGGTT CAAACCCATA 
50
TCAAACCAAC GCCATGACCA CTACACCAAC CGGTTCAGAC CATCCAGCTT 
100
ACCATCAGAT CCACCAGCAA CAACAACAAC AGCTCACTCA ACAGCTTCAA 
150
TCTTTCTGGG AGACTCAATT CAAAGAGATT GAGAAAACCA CTGATTTCAA 
200
GAACCATAGC CTTCCATTGG CAAGAATCAA GAAAATCATG AAAGCTGATG 
250
AAGATGTGCG TATGATCTCG GCCGAGGCGC CTGTTGTGTT CGCCAGGGCC 
300
TGCGAGATGT TTATTCTGGA GCTTACGTTA AGGTCTTGGA ACCATACTGA 
350
GGAGAACAAG AGAAGGACGT TGCAGAAGAA TGATATCGCG GCTGCGGTGA 
400
CTAGAACTGA TATTTTTGAT TTTCTTGTGG ATATTGTTCC TCGGGAGGAT 
450
CTTCGTGATG AAGTCTTGGG TGGTGTTGGT GCTGAAGCTG CTACAGCTGC 
500
GGGTTATCCG TATGGATACT TGCCTCCTGG AACAGCTCCA ATTGGGAACC 
550
CGGGAATGGT TATGGGTAAC CCGGGCGCGT ATCCGCCGAA CCCGTATATG 
600
GGTCAGCCAA TGTGGCAACA ACCAGGACCT GAGCAGCAGG ATCCTGACAA 
650
TTAG
700

>AT1G54830.2 longest ORF length:217
MDQQGQSSAM NYGSNPYQTN AMTTTPTGSD HPAYHQIHQQ QQQQLTQQLQ 
50
SFWETQFKEI EKTTDFKNHS LPLARIKKIM KADEDVRMIS AEAPVVFARA 
100
CEMFILELTL RSWNHTEENK RRTLQKNDIA AAVTRTDIFD FLVDIVPRED 
150
LRDEVLGGVG AEAATAAGYP YGYLPPGTAP IGNPGMVMGN PGAYPPNPYM 
200
GQPMWQQPGP EQQDPDN
250