fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G55110 ARABIDOPSISTHALIANAINDETERMINATE(ID)-DOMAIN7, ATIDD7, ARABIDOPSISTHALIANAINDETERMINATE(ID)-DOMAIN7 indeterminate(ID)-domain 7 (.1)

>AT1G55110.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, EcoRV, HpaI, KpnI, NheI, NotI, PacI, PstI, PvuII, SalI, SmaI, XbaI, XhoI
Name Recognition sequence Cut positions
HindIII A|AGCTT 355, 704, 1169
NcoI C|CATGG 798
NdeI CA|TATG 276
SacI GAGCT|C 443
SpeI A|CTAGT 124
StyI C|C[AT][AT]GG 798, 850


Click here to view TAIR data

>AT1G55110.1 length:1368
ATGATGATGA ACAGAGACAT ATTATTTCAT CAACAACAAC AGCAACAAAT 
50
GGAAGAGAAC ATGTCGAATC TAACATCAGC TTCAGGAGAT CAAGCAAGTG 
100
TGTCTTCAGG AAACAGAACT GAAACTAGTG GCTCTAACAT TAATCAGCAT 
150
CATCAAGAAC AGTGTTTTGT TCCACAATCG TCTCTTAAGA GGAAGAGAAA 
200
TCAACCAGGA AATCCAGACC CAGAAGCAGA AGTGATGGCC TTATCACCAA 
250
AGACACTAAT GGCGACAAAC AGATTCATAT GTGAGGTCTG CAACAAAGGT 
300
TTTCAAAGAG ACCAAAACTT GCAACTTCAC AAGAGAGGAC ATAATCTACC 
350
GTGGAAGCTT AAACAAAGAT CAAACAAAGA TGTGGTTAGG AAGAAAGTTT 
400
ATGTTTGTCC AGAGCCAGGC TGTGTCCATC ACCATCCATC GAGAGCTCTT 
450
GGTGACTTAA CCGGAATCAA GAAGCATTTC TTCAGAAAAC ATGGCGAGAA 
500
GAAATGGAAA TGTGAAAAGT GTTCCAAGAA ATATGCGGTG CAATCAGATT 
550
GGAAGGCTCA TGCTAAGACT TGTGGCACTA AAGAATACAA ATGCGACTGT 
600
GGAACTCTCT TTTCTAGGAG GGATAGTTTC ATAACTCATA GAGCATTTTG 
650
CGATGCATTA GCAGAAGAGA GTGCAAGAGC CATGCCAAAC CCTATTATGA 
700
TCCAAGCTTC AAATTCTCCT CATCATCATC ATCATCAAAC ACAACAAAAC 
750
ATCGGTTTCT CTTCGTCATC CCAAAACATC ATCAGCAACA GCAATCTCCA 
800
TGGTCCTATG AAGCAAGAAG AATCACAGCA TCACTATCAA AATATCCCTC 
850
CTTGGCTTAT CTCATCAAAC CCTAACCCTA ATGGCAACAA TGGTAATTTG 
900
TTCCCTCCTG TTGCTTCTTC TGTGAATACC GGGAGGTCCA GCTTTCCCCA 
950
CCCATCGCCG GCTATGTCAG CCACAGCTTT GCTCCAGAAA GCAGCTCAAA 
1000
TGGGTTCTAC GAAGTCAACA ACTCCAGAGG AAGAAGAGAG GTCTTCGAGG 
1050
TCAAGCTATA ATAACTTGAT CACGACTACA ATGGCTGCTA TGATGACTTC 
1100
ACCACCAGAA CCTGGCTTCG GATTTCAAGA CTATTACATG ATGAATCATC 
1150
AACATCACGG TGGAGGAGAA GCTTTCAACG GTGGTTTTGT CCCCGGAGAA 
1200
GAGAAGAACG ACGTCGTGGA CGACGGTGGA GGAGAGACGA GAGATTTCTT 
1250
GGGGCTAAGG TCGTTAATGT CGCATAACGA GATTCTAAGT TTCGCGAATA 
1300
ATCTTGGCAA CTGTCTCAAC ACTTCTGCTA CAGAGCAACA ACAACAACAA 
1350
CATAGCCACC AAGATTAA
1400

>AT1G55110.1 longest ORF length:455
MMMNRDILFH QQQQQQMEEN MSNLTSASGD QASVSSGNRT ETSGSNINQH 
50
HQEQCFVPQS SLKRKRNQPG NPDPEAEVMA LSPKTLMATN RFICEVCNKG 
100
FQRDQNLQLH KRGHNLPWKL KQRSNKDVVR KKVYVCPEPG CVHHHPSRAL 
150
GDLTGIKKHF FRKHGEKKWK CEKCSKKYAV QSDWKAHAKT CGTKEYKCDC 
200
GTLFSRRDSF ITHRAFCDAL AEESARAMPN PIMIQASNSP HHHHHQTQQN 
250
IGFSSSSQNI ISNSNLHGPM KQEESQHHYQ NIPPWLISSN PNPNGNNGNL 
300
FPPVASSVNT GRSSFPHPSP AMSATALLQK AAQMGSTKST TPEEEERSSR 
350
SSYNNLITTT MAAMMTSPPE PGFGFQDYYM MNHQHHGGGE AFNGGFVPGE 
400
EKNDVVDDGG GETRDFLGLR SLMSHNEILS FANNLGNCLN TSATEQQQQQ 
450
HSHQD
500