fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G56170 NF-YC2, ATHAP5B, HAP5B "nuclear factor Y, subunit C2", nuclear factor Y, subunit C2 (.1.2)

>AT1G56170.2 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BglII, EcoRI, EcoRV, HindIII, HpaI, KpnI, NcoI, NheI, NotI, PacI, PstI, PvuII, SalI, SmaI, SpeI, XbaI, XhoI
Name Recognition sequence Cut positions
BamHI G|GATCC 356
NdeI CA|TATG 100
SacI GAGCT|C 337
StyI C|C[AT][AT]GG 311


Click here to view TAIR data

>AT1G56170.2 length:600
ATGGAGCAGT CAGAAGAGGG TCAACAGCAA CAGCAACAGG GAGTGATGGA 
50
TTATGTACCT CCTCATGCTT ATCAGAGTGG GCCAGTAAAT GCAGCTTCCC 
100
ATATGGCATT CCAACAAGCT CACCACTTCC ACCACCACCA TCAGCAGCAA 
150
CAACAGCAGC AGCTTCAGAT GTTCTGGGCT AACCAAATGC AAGAGATCGA 
200
GCATACCACT GATTTCAAGA ACCACACCCT TCCCCTAGCC CGCATCAAGA 
250
AGATCATGAA AGCTGATGAA GATGTGAGGA TGATCTCTGC GGAGGCTCCT 
300
GTGATTTTTG CCAAGGCCTG TGAGATGTTC ATTTTGGAGC TCACTCTACG 
350
TGCTTGGATC CACACCGAGG AGAACAAGAG GAGGACCTTG CAGAAGAACG 
400
ACATCGCCGC TGCCATTTCC AGGACCGACG TGTTTGATTT CCTTGTGGAC 
450
ATAATCCCGA GGGACGAGCT GAAAGAAGAA GGTTTAGGCG TGACCAAAGG 
500
GACCATACCA TCGGTGGTGG GTTCCCCGCC ATACTATTAC TTGCAACAAC 
550
AGGGGATGAT GCAACACTGG CCCCAGGAGC AACACCCTGA TGAGTCTTAA 
600

>AT1G56170.2 longest ORF length:199
MEQSEEGQQQ QQQGVMDYVP PHAYQSGPVN AASHMAFQQA HHFHHHHQQQ 
50
QQQQLQMFWA NQMQEIEHTT DFKNHTLPLA RIKKIMKADE DVRMISAEAP 
100
VIFAKACEMF ILELTLRAWI HTEENKRRTL QKNDIAAAIS RTDVFDFLVD 
150
IIPRDELKEE GLGVTKGTIP SVVGSPPYYY LQQQGMMQHW PQEQHPDES
200