fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G59640 ZCW32, bHLH031, BPE, BPEUB, BPEP BIG PETAL UB, BIG PETAL P (.1.2)

>AT1G59640.2 CDS map

>>Show genomic map




Uncut enzymes: AatII, Acc65I, AccI, AccIII(BspMII), AclI, AfeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AseI, AvrII, BaeI, BalI, BanI, BanII, BbsI, BbvCI, BbvI, BcgI, BciVI, BglI, BlpI, BmrI, BpmI, BsaAI, BsaHI, BsaI, BsaXI, BseRI, BsgI, BsiEI, BsiHKAI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, Bsp1286I, BspEI, BspMI, BspT107I(HgiCI), BsrGI, BsrI, BssHII, BssSI, BstAPI, BstBI, BstEII, BstXI, BstZ17I, BtgI, BtrI, BtsI, Cac8I, DraI, DraIII, DrdI, EaeI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HaeIII, HgaI, HpaI, HphI, Hpy99I, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MlyI, MnlI, MscI, NaeI, , NarI, NcoI, NdeI, NgoMIV, NheI, NotI, NruI, NsiI, PI-PspI, PI-SceI(VDE), PacI, PflFI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspOMI, PstI, PvuI, RsaI, RsrII, SacI, SacII, SalI, SapI, SbfI, ScaI, SexAI, SfaNI, SfcI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SpeI, SphI, SspI, StuI, StyI, SwaI, TspRI, Tth111I, XcmI, XmaI
Name Recognition sequence Cut positions
AccII(FnuDII) CG|CG 168, 181
AciI C|CGC 81
AflII C|TTAAG 838
AflIII A|CPuPyGT 182, 719, 868
AgeI A|CCGGT 930
AluI AG|CT 104, 148, 409, 424, 445, 603
ApoI Pu|AATTPy 968, 1004
AvaI C|PyCGPuG 740, 887
AvaII G|G[AT]CC 30, 114
BamHI G|GATCC 3
BclI T|GATCA 677
BfaI C|TAG 41, 96, 276, 344, 411, 542
BglII A|GATCT 50, 498
BsaBI GATNN|NNATC 137, 487
BsaJI C|CNNGG 633
BsaWI [AT]|CCGG[AT] 930
BslI CCNNNNN|NNGG 69, 220
BsoBI C|PyCGPuG 740, 887
BspDI AT|CGAT 597
BspHI T|CATGA 674
BsrBI GAG|CGG 478
BsrDI GCAATGNN| 925
BsrFI Pu|CCGGPy 930
BssKI |CCNGG 507, 633
BstF5I GGATGNN| 15, 483, 512
BstNI CC|[AT]GG 633
BstUI CG|CG 168, 181
BstYI Pu|GATCPy 3, 50, 498
Bsu36I CC|TNAGG 961
Cfr10I [AG]|CCGG[TC] 930
ClaI AT|CGAT 597
DdeI C|TNAG 190, 244, 913, 960
DpnI GA-CH3|TC 2, 49, 137, 161, 256, 497, 676
DpnII |GATC 2, 49, 137, 161, 256, 497, 676
Fnu4HI GC|NGC 150
HaeII PuGCGC|Py 217, 274
HhaI GCG|C 167, 216, 273
HinP1I G|CGC 167, 216, 273
HincII GTPy|PuAC 616
HindIII A|AGCTT 105, 604
HinfI G|ANTC 90, 119, 176, 240, 339, 668, 749, 895
HpaII C|CGG 84, 213, 506, 929
Hpy188I TCN|GA 5
HpyCH4III ACN|GT 32, 157, 439
HpyCH4IV A|CGT 577
HpyCH4V TG|CA 492, 573, 785, 920
MboI |GATC 2, 49, 137, 161, 256, 497, 676
MluI A|CGCGT 182
MseI T|TAA 36, 555, 777, 837, 992
MslI CAPyNN|NNPuTG 923
MspA1I C[AC]G|C[GT]G 149
MspI C|CGG 84, 213, 506, 929
MwoI GCNNNNN|NNGC 453
N.BstNBI GAGTCNNNN|N 181, 245, 754, 900
NciI CC|[CG]GG 507
NlaIII CATG| 401, 673, 718, 862, 867
NlaIV GGN|NCC 3, 381
NspI PuCATG|Py 719, 868
PaeR7I C|TCGAG 887
PciI A|CATGT 719, 868
PspGI |CC[AT]GG 633
PvuII CAG|CTG 149
Sau3AI |GATC 2, 49, 137, 161, 256, 497, 676
Sau96I G|GNCC 30, 114
ScrFI CC|NGG 507, 633
SmlI C|TPyPuAG 621, 838, 887
Taqƒ¿I T|CGA 406, 596, 639, 728, 753, 877, 886
TfiI G|A[AT]TC 90, 119, 339, 668
TliI C|TCGAG 887
TseI G|C[AT]GC 150
Tsp45I |GT[CG]AC 178, 436, 799
Tsp509I |AATT 553, 967, 1003
XbaI T|CTAGA 97, 543
XhoI C|TCGAG 887
XmnI GAANN|NNTTC 124


Click here to view TAIR data

>AT1G59640.2 length:1032
ATGGATCCGA GTGGGATGAT GAACGAAGGA GGACCGTTTA ATCTAGCGGA 
50
GATCTGGCAG TTTCCGTTGA ACGGAGTTTC AACCGCCGGA GATTCTTCTA 
100
GAAGAAGCTT CGTTGGACCG AATCAGTTCG GTGATGCTGA TCTAACCACA 
150
GCTGCTAACG GTGATCCAGC GCGTATGAGT CACGCGTTGT CTCAGGCGGT 
200
TATTGAAGGT ATCTCCGGCG CTTGGAAACG GAGGGAAGAT GAGTCTAAGT 
250
CGGCGAAGAT CGTCTCCACC ATTGGCGCTA GTGAAGGTGA GAACAAAAGA 
300
CAGAAGATAG ATGAAGTGTG TGATGGGAAA GCAGAAGCAG AATCGCTAGG 
350
AACAGAGACG GAACAAAAGA AGCAACAGAT GGAACCAACG AAAGATTATA 
400
TTCATGTTCG AGCTAGAAGA GGTCAAGCTA CTGATAGTCA CAGTTTAGCT 
450
GAAAGAGCGA GAAGAGAGAA AATAAGTGAG CGGATGAAAA TCTTGCAAGA 
500
TCTTGTTCCG GGATGTAACA AGGTTATTGG AAAAGCACTT GTTCTAGATG 
550
AGATAATTAA CTATATACAA TCATTGCAAC GTCAAGTTGA GTTCTTATCG 
600
ATGAAGCTTG AAGCAGTCAA CTCAAGAATG AACCCTGGTA TCGAGGTTTT 
650
TCCACCCAAA GAGGTGATGA TTCTCATGAT CATCAACTCA ATCTTCTCCA 
700
TTTTTTTCAC AAAACAATAC ATGTTTCTAT CGAGGTATTC TCGGGGTAGG 
750
AGTCTCGATG TTTATGCGGT TCGGTCATTT AAGCATTGCA ATAAACGGAG 
800
TGACCTCTGT TTTTGCTCCT GCTCCCCAAA AACAGAACTT AAGACAACTA 
850
TATTTTCACA AAACATGACA TGTTTCTGTC GATATTCTCG AGTAGGAGTC 
900
GCTATTAGTT CATCTAAGCA TTGCAATGAA CCGGTTACGC TCTGTTTTTA 
950
CTCCTACTGC CTAAGGAAAA TTTATCATTT TCTGTTGTGG AACTTAAAAT 
1000
ACAAAATTCA AAAATCTGTT TTGTTTTCTT GA
1050

>AT1G59640.2 longest ORF length:343
MDPSGMMNEG GPFNLAEIWQ FPLNGVSTAG DSSRRSFVGP NQFGDADLTT 
50
AANGDPARMS HALSQAVIEG ISGAWKRRED ESKSAKIVST IGASEGENKR 
100
QKIDEVCDGK AEAESLGTET EQKKQQMEPT KDYIHVRARR GQATDSHSLA 
150
ERARREKISE RMKILQDLVP GCNKVIGKAL VLDEIINYIQ SLQRQVEFLS 
200
MKLEAVNSRM NPGIEVFPPK EVMILMIINS IFSIFFTKQY MFLSRYSRGR 
250
SLDVYAVRSF KHCNKRSDLC FCSCSPKTEL KTTIFSQNMT CFCRYSRVGV 
300
AISSSKHCNE PVTLCFYSYC LRKIYHFLLW NLKYKIQKSV LFS
350