fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G59750 ARF1 auxin response factor 1 (.1.2.3.4)

>AT1G59750.1 CDS map

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Uncut enzymes: AatII, Acc65I, AccII(FnuDII), AccIII(BspMII), AclI, AfeI, AflIII, AgeI, AhdI, AlwI, Aor51HI(Eco47III), ApaI, ApoI, AscI, AseI, AvrII, BaeI, BamHI, BanI, BbsI, BbvI, BcgI, BciVI, BclI, BglI, BlpI, BmrI, BpmI, BsaI, BsaWI, BsaXI, BseRI, BsgI, BsiEI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BspDI, BspEI, BspHI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrFI, BsrGI, BssHII, BstBI, BstUI, BstXI, BstZ17I, BtrI, Cfr10I, ClaI, DraI, EagI, EarI, EciI, EcoRI, FauI, FokI, FseI, HaeII, HgaI, HincII, HindIII, HpaI, HphI, Hpy99I, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, N.BstNBI, NaeI, , NarI, NdeI, NgoMIV, NheI, NotI, NruI, PI-PspI, PI-SceI(VDE), PacI, PciI, PleI, PmeI, PmlI, PshAI, PsiI, PspOMI, PstI, PvuI, RsrII, SacII, SalI, SapI, SbfI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SspI, StuI, SwaI, XbaI, XmaI
Name Recognition sequence Cut positions
AccI GT|[AC][TG]AC 1613
AciI C|CGC 1100
AflII C|TTAAG 630
AluI AG|CT 4, 63, 150, 590, 648, 748, 844, 858, 904, 1240, 1324, 1410, 1625, 1666, 1713, 1926, 1933
AlwNI CAGNNN|CTG 859, 1148
ApaLI G|TGCAC 354, 1639
AvaI C|PyCGPuG 154, 256, 910
AvaII G|G[AT]CC 84, 734, 1152, 1161
BalI TGG|CCA 1512
BanII GPuGCPy|C 64, 253, 649, 1057
BbvCI CC|TCAGC 1094
BfaI C|TAG 318, 602, 1061, 1412
BglII A|GATCT 1701
BsaAI PyAC|GTPu 1622
BsaBI GATNN|NNATC 1858, 1974
BsaHI GPu|CGPyC 554
BsaJI C|CNNGG 171, 455, 478, 540, 550, 796, 1045, 1193, 1822
BsiHKAI G[AT]GC[AT]|C 64, 354, 649, 1639
BslI CCNNNNN|NNGG 108, 176, 245, 455, 916, 1149, 1588, 1765
BsoBI C|PyCGPuG 154, 256, 910
Bsp1286I G[GAT]GC[CAT]|C 64, 253, 354, 649, 1057, 1639
BsrI ACTGGN| 300, 571, 1150
BssKI |CCNGG 30, 1128, 1193
BssSI C|TCGTG 104
BstAPI GCANNNN|NTGC 188, 753, 1320, 1914
BstEII G|GTNACC 1568
BstF5I GGATGNN| 575, 1435, 1923
BstNI CC|[AT]GG 30, 1128
BstYI Pu|GATCPy 215, 1701
Bsu36I CC|TNAGG 1871
BtgI C|CPuPyGG 478, 1822
BtsI GCAGTGNN| 1654
Cac8I GCN|NGC 72, 722, 872, 1514
DdeI C|TNAG 211, 847, 1093, 1211, 1522, 1573, 1748, 1870
DpnI GA-CH3|TC 214, 302, 984, 1290, 1478, 1700, 1817, 1968, 1986
DpnII |GATC 214, 302, 984, 1290, 1478, 1700, 1817, 1968, 1986
DraIII CACNNN|GTG 407
DrdI GACNNNN|NNGTC 807
EaeI Py|GGCCPu 1512
EcoNI CCTNN|NNNAGG 108, 1588
EcoO109I PuG|GNCCPy 735
EcoRV GAT|ATC 1732
Fnu4HI GC|NGC 3, 149, 668, 747, 1242, 1323, 1449, 1627, 1925
FspI TGC|GCA 276
HaeIII GG|CC 137, 542, 1302, 1511
HhaI GCG|C 241, 275
HinP1I G|CGC 241, 275
HinfI G|ANTC 889, 972, 1329, 1356, 1506, 1602, 1752
HpaII C|CGG 1193
Hpy188I TCN|GA 390, 538, 652, 810, 975, 1521, 1545, 1686
HpyCH4III ACN|GT 357, 476
HpyCH4IV A|CGT 1247, 1621
HpyCH4V TG|CA 165, 353, 371, 433, 493, 504, 723, 739, 1066, 1312, 1321, 1628, 1638, 1644, 1654, 1915, 1923, 1939
MboI |GATC 214, 302, 984, 1290, 1478, 1700, 1817, 1968, 1986
MscI TGG|CCA 1512
MseI T|TAA 41, 629, 1347, 1425, 1529
MslI CAPyNN|NNPuTG 77, 437, 512, 1636, 1804
MspA1I C[AC]G|C[GT]G 1325
MspI C|CGG 1193
MwoI GCNNNNN|NNGC 188, 527, 560, 615, 747, 1242, 1320, 1523, 1914
NciI CC|[CG]GG 1193
NcoI C|CATGG 1822
NlaIII CATG| 71, 142, 404, 431, 673, 721, 752, 871, 968, 1256, 1642, 1798, 1821
NlaIV GGN|NCC 734
NsiI ATGCA|T 724
NspI PuCATG|Py 72, 432, 722, 872, 1643
PaeR7I C|TCGAG 154
PflFI GACN|NNGTC 1683
PflMI CCANNNN|NTGG 176, 1149, 1765
PpuMI PuG|G[AT]CCPy 735
PspGI |CC[AT]GG 30, 1128
PvuII CAG|CTG 1325
RsaI GT|AC 359, 1074
SacI GAGCT|C 64, 649
Sau3AI |GATC 214, 302, 984, 1290, 1478, 1700, 1817, 1968, 1986
Sau96I G|GNCC 84, 734, 1152, 1161, 1303
ScaI AGT|ACT 1075
ScrFI CC|NGG 30, 1128, 1193
SfcI C|TPuPyAG 866, 1392, 1475
SmlI C|TPyPuAG 154, 630, 1054, 1598
SnaBI TAC|GTA 1622
SpeI A|CTAGT 603
SphI GCATG|C 72, 722, 872
StyI C|C[AT][AT]GG 171, 455, 550, 796, 1045, 1822
Taqƒ¿I T|CGA 153, 593, 840, 891
TfiI G|A[AT]TC 889, 972, 1329, 1356, 1602, 1752
TliI C|TCGAG 154
TseI G|C[AT]GC 3, 149, 747, 1242, 1323, 1449, 1627, 1925
Tsp45I |GT[CG]AC 1567
Tsp509I |AATT 486
TspRI NNCA[CG]TGNN| 925, 1150, 1215, 1654
Tth111I GACN|NNGTC 1683
XcmI CCANNNNN|NNNNTGG 1183
XhoI C|TCGAG 154
XmnI GAANN|NNTTC 919, 1831, 1855


Click here to view TAIR data

>AT1G59750.1 length:1998
ATGGCAGCTT CCAATCATTC ATCTGGTAAA CCTGGAGGAG TTTTAAGTGA 
50
TGCTTTATGT AGGGAGCTCT GGCATGCCTG TGCTGGACCT CTTGTAACCC 
100
TACCTCGTGA AGGGGAACGA GTTTATTATT TCCCTGAAGG CCACATGGAG 
150
CAGCTCGAGG CATCAATGCA CCAAGGTTTG GAGCAACAGA TGCCTTCCTT 
200
CAACCTCCCA TCTAAGATCC TCTGTAAAGT TATCAACATC CAGCGCAGGG 
250
CAGAGCCCGA GACTGACGAA GTATATGCGC AAATAACCTT ATTGCCAGAA 
300
CTGGATCAAA GCGAACCCAC TAGCCCAGAT GCCCCTGTTC AAGAACCTGA 
350
AAAGTGCACC GTACATTCAT TTTGCAAGAC ACTAACTGCT TCAGACACAA 
400
GCACACATGG TGGCTTCTCG GTGCTACGGA GACATGCAGA TGATTGTCTC 
450
CCACCCTTGG ATATGTCCCA ACAACCACCG TGGCAAGAAT TGGTTGCAAC 
500
TGATTTGCAC AATAGTGAAT GGCATTTTAG GCACATTTTC CGAGGCCAAC 
550
CAAGGCGTCA TTTGCTAACA ACTGGATGGA GTGTTTTTGT TAGCTCGAAG 
600
AAACTAGTGG CTGGTGATGC TTTCATATTC TTAAGGGGTG AGAATGAAGA 
650
GCTCCGAGTA GGTGTTAGGC GGCACATGAG ACAACAGACT AATATCCCGT 
700
CATCTGTCAT TTCAAGTCAT AGCATGCATA TTGGGGTCCT TGCAACAGCA 
750
GCTCATGCCA TTACAACAGG AACAATCTTT TCTGTCTTCT ACAAGCCAAG 
800
GACAAGTAGG TCAGAGTTTA TTGTGAGCGT CAATAGGTAT CTCGAAGCTA 
850
AGACCCAGAA GCTGTCTGTA GGCATGCGTT TCAAGATGAG ATTCGAGGGG 
900
GAAGAAGCTC CCGAGAAAAG GTTCAGTGGC ACAATAGTTG GTGTTCAGGA 
950
AAATAAGTCT TCGGTCTGGC ATGATTCTGA ATGGAGATCG CTAAAGGTTC 
1000
AATGGGACGA ACCCTCATCT GTATTTCGTC CTGAAAGAGT TTCACCTTGG 
1050
GAACTTGAGC CCCTAGTTGC AAATAGTACT CCGTCTTCAC AACCTCAGCC 
1100
TCCGCAAAGG AACAAACGAC CAAGACCTCC TGGTTTACCT TCACCAGCCA 
1150
CTGGTCCATC TGGTCCTGTT ACTCCAGATG GTGTGTGGAA ATCCCCGGCA 
1200
GACACTCCTT CCTCAGTGCC ATTATTCTCT CCTCCTGCCA AAGCTGCTAC 
1250
GTTTGGTCAT GGTGGGAACA AATCATTTGG AGTATCTATT GGATCAGCCT 
1300
TTTGGCCCAC CAATGCAGAT AGTGCAGCTG AATCCTTTGC TTCAGCGTTT 
1350
AACAATGAAT CTACTGAAAA GAAACAAACT AATGGAAATG TCTGTAGGCT 
1400
TTTTGGGTTT GAGCTAGTTG AAAATGTTAA TGTGGATGAA TGTTTCTCTG 
1450
CTGCCTCTGT GTCTGGTGCT GTCGCTGTAG ATCAACCTGT CCCATCCAAC 
1500
GAGTTTGACT CTGGCCAGCA ATCTGAGCCA TTAAACATCA ACCAATCTGA 
1550
TATTCCTTCG GGGAGTGGTG ACCCTGAGAA ATCCTCTTTG AGGTCTCCTC 
1600
AAGAATCACA AAGTAGACAG ATACGTAGCT GCACAAAGGT GCACATGCAA 
1650
GGCAGTGCAG TAGGCAGAGC TATTGATTTG ACAAGGTCAG AGTGTTATGA 
1700
AGATCTGTTC AAGAAGCTGG AAGAGATGTT TGATATCAAG GGTGAACTCT 
1750
TAGAATCTAC CAAAAAATGG CAAGTCGTTT ACACCGATGA TGAAGATGAC 
1800
ATGATGATGG TTGGTGATGA TCCATGGAAT GAGTTCTGTG GAATGGTGAG 
1850
GAAGATATTC ATCTACACAC CTGAGGAAGT GAAGAAACTT TCACCGAAGA 
1900
ACAAACTCGC AGTCAATGCA AGGATGCAGC TCAAAGCTGA TGCAGAGGAA 
1950
AATGGGAATA CAGAGGGCAG ATCATCATCT ATGGCGGGAT CAAGATGA
2000

>AT1G59750.1 longest ORF length:665
MAASNHSSGK PGGVLSDALC RELWHACAGP LVTLPREGER VYYFPEGHME 
50
QLEASMHQGL EQQMPSFNLP SKILCKVINI QRRAEPETDE VYAQITLLPE 
100
LDQSEPTSPD APVQEPEKCT VHSFCKTLTA SDTSTHGGFS VLRRHADDCL 
150
PPLDMSQQPP WQELVATDLH NSEWHFRHIF RGQPRRHLLT TGWSVFVSSK 
200
KLVAGDAFIF LRGENEELRV GVRRHMRQQT NIPSSVISSH SMHIGVLATA 
250
AHAITTGTIF SVFYKPRTSR SEFIVSVNRY LEAKTQKLSV GMRFKMRFEG 
300
EEAPEKRFSG TIVGVQENKS SVWHDSEWRS LKVQWDEPSS VFRPERVSPW 
350
ELEPLVANST PSSQPQPPQR NKRPRPPGLP SPATGPSGPV TPDGVWKSPA 
400
DTPSSVPLFS PPAKAATFGH GGNKSFGVSI GSAFWPTNAD SAAESFASAF 
450
NNESTEKKQT NGNVCRLFGF ELVENVNVDE CFSAASVSGA VAVDQPVPSN 
500
EFDSGQQSEP LNINQSDIPS GSGDPEKSSL RSPQESQSRQ IRSCTKVHMQ 
550
GSAVGRAIDL TRSECYEDLF KKLEEMFDIK GELLESTKKW QVVYTDDEDD 
600
MMMVGDDPWN EFCGMVRKIF IYTPEEVKKL SPKNKLAVNA RMQLKADAEE 
650
NGNTEGRSSS MAGSR
700