Locus |
Common name |
Short description |
AT1G59750 |
ARF1 |
auxin response factor 1 (.1.2.3.4) |
>AT1G59750.2 CDS map
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Uncut enzymes: AatII, Acc65I, AccII(FnuDII), AccIII(BspMII), AclI, AfeI, AflIII, AgeI, AhdI, AlwI, Aor51HI(Eco47III), ApaI, ApoI, AscI, AseI, AvrII, BaeI, BamHI, BanI, BbsI, BbvI, BcgI, BciVI, BclI, BglI, BlpI, BmrI, BpmI, BsaI, BsaWI, BsaXI, BseRI, BsgI, BsiEI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BspDI, BspEI, BspHI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrFI, BsrGI, BssHII, BstBI, BstUI, BstXI, BstZ17I, BtrI, Cfr10I, ClaI, DraI, EagI, EarI, EciI, EcoRI, FauI, FokI, FseI, HaeII, HgaI, HincII, HindIII, HpaI, HphI, Hpy99I, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, N.BstNBI, NaeI, , NarI, NdeI, NgoMIV, NheI, NotI, NruI, PI-PspI, PI-SceI(VDE), PacI, PciI, PleI, PmeI, PmlI, PshAI, PsiI, PspOMI, PstI, PvuI, RsrII, SacII, SalI, SapI, SbfI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SspI, StuI, SwaI, XbaI, XcmI, XmaI
Name |
Recognition sequence |
Cut positions |
AccI
| GT|[AC][TG]AC |
1604 |
AciI
| C|CGC |
1100 |
AflII
| C|TTAAG |
630 |
AluI
| AG|CT |
4, 63, 150, 590, 648, 748, 844, 858, 904, 1231, 1315, 1401, 1616, 1657, 1704, 1917, 1924 |
AlwNI
| CAGNNN|CTG |
859, 1148 |
ApaLI
| G|TGCAC |
354, 1630 |
AvaI
| C|PyCGPuG |
154, 256, 910 |
AvaII
| G|G[AT]CC |
84, 734, 1152, 1161 |
BalI
| TGG|CCA |
1503 |
BanII
| GPuGCPy|C |
64, 253, 649, 1057 |
BbvCI
| CC|TCAGC |
1094 |
BfaI
| C|TAG |
318, 602, 1061, 1403 |
BglII
| A|GATCT |
1692 |
BsaAI
| PyAC|GTPu |
1613 |
BsaBI
| GATNN|NNATC |
1849, 1965 |
BsaHI
| GPu|CGPyC |
554 |
BsaJI
| C|CNNGG |
171, 455, 478, 540, 550, 796, 1045, 1184, 1813 |
BsiHKAI
| G[AT]GC[AT]|C |
64, 354, 649, 1630 |
BslI
| CCNNNNN|NNGG |
108, 176, 245, 455, 916, 1149, 1579, 1756 |
BsoBI
| C|PyCGPuG |
154, 256, 910 |
Bsp1286I
| G[GAT]GC[CAT]|C |
64, 253, 354, 649, 1057, 1630 |
BsrI
| ACTGGN| |
300, 571, 1150 |
BssKI
| |CCNGG |
30, 1128, 1184 |
BssSI
| C|TCGTG |
104 |
BstAPI
| GCANNNN|NTGC |
188, 753, 1311, 1905 |
BstEII
| G|GTNACC |
1559 |
BstF5I
| GGATGNN| |
575, 1426, 1914 |
BstNI
| CC|[AT]GG |
30, 1128 |
BstYI
| Pu|GATCPy |
215, 1692 |
Bsu36I
| CC|TNAGG |
1862 |
BtgI
| C|CPuPyGG |
478, 1813 |
BtsI
| GCAGTGNN| |
1645 |
Cac8I
| GCN|NGC |
72, 722, 872, 1505 |
DdeI
| C|TNAG |
211, 847, 1093, 1202, 1513, 1564, 1739, 1861 |
DpnI
| GA-CH3|TC |
214, 302, 984, 1281, 1469, 1691, 1808, 1959, 1977 |
DpnII
| |GATC |
214, 302, 984, 1281, 1469, 1691, 1808, 1959, 1977 |
DraIII
| CACNNN|GTG |
407 |
DrdI
| GACNNNN|NNGTC |
807 |
EaeI
| Py|GGCCPu |
1503 |
EcoNI
| CCTNN|NNNAGG |
108, 1579 |
EcoO109I
| PuG|GNCCPy |
735 |
EcoRV
| GAT|ATC |
1723 |
Fnu4HI
| GC|NGC |
3, 149, 668, 747, 1233, 1314, 1440, 1618, 1916 |
FspI
| TGC|GCA |
276 |
HaeIII
| GG|CC |
137, 542, 1293, 1502 |
HhaI
| GCG|C |
241, 275 |
HinP1I
| G|CGC |
241, 275 |
HinfI
| G|ANTC |
889, 972, 1320, 1347, 1497, 1593, 1743 |
HpaII
| C|CGG |
1184 |
Hpy188I
| TCN|GA |
390, 538, 652, 810, 975, 1512, 1536, 1677 |
HpyCH4III
| ACN|GT |
357, 476 |
HpyCH4IV
| A|CGT |
1238, 1612 |
HpyCH4V
| TG|CA |
165, 353, 371, 433, 493, 504, 723, 739, 1066, 1303, 1312, 1619, 1629, 1635, 1645, 1906, 1914, 1930 |
MboI
| |GATC |
214, 302, 984, 1281, 1469, 1691, 1808, 1959, 1977 |
MscI
| TGG|CCA |
1503 |
MseI
| T|TAA |
41, 629, 1338, 1416, 1520 |
MslI
| CAPyNN|NNPuTG |
77, 437, 512, 1627, 1795 |
MspA1I
| C[AC]G|C[GT]G |
1316 |
MspI
| C|CGG |
1184 |
MwoI
| GCNNNNN|NNGC |
188, 527, 560, 615, 747, 1233, 1311, 1514, 1905 |
NciI
| CC|[CG]GG |
1184 |
NcoI
| C|CATGG |
1813 |
NlaIII
| CATG| |
71, 142, 404, 431, 673, 721, 752, 871, 968, 1247, 1633, 1789, 1812 |
NlaIV
| GGN|NCC |
734 |
NsiI
| ATGCA|T |
724 |
NspI
| PuCATG|Py |
72, 432, 722, 872, 1634 |
PaeR7I
| C|TCGAG |
154 |
PflFI
| GACN|NNGTC |
1674 |
PflMI
| CCANNNN|NTGG |
176, 1149, 1756 |
PpuMI
| PuG|G[AT]CCPy |
735 |
PspGI
| |CC[AT]GG |
30, 1128 |
PvuII
| CAG|CTG |
1316 |
RsaI
| GT|AC |
359, 1074 |
SacI
| GAGCT|C |
64, 649 |
Sau3AI
| |GATC |
214, 302, 984, 1281, 1469, 1691, 1808, 1959, 1977 |
Sau96I
| G|GNCC |
84, 734, 1152, 1161, 1294 |
ScaI
| AGT|ACT |
1075 |
ScrFI
| CC|NGG |
30, 1128, 1184 |
SfcI
| C|TPuPyAG |
866, 1383, 1466 |
SmlI
| C|TPyPuAG |
154, 630, 1054, 1589 |
SnaBI
| TAC|GTA |
1613 |
SpeI
| A|CTAGT |
603 |
SphI
| GCATG|C |
72, 722, 872 |
StyI
| C|C[AT][AT]GG |
171, 455, 550, 796, 1045, 1813 |
Taqƒ¿I
| T|CGA |
153, 593, 840, 891 |
TfiI
| G|A[AT]TC |
889, 972, 1320, 1347, 1593, 1743 |
TliI
| C|TCGAG |
154 |
TseI
| G|C[AT]GC |
3, 149, 747, 1233, 1314, 1440, 1618, 1916 |
Tsp45I
| |GT[CG]AC |
1558 |
Tsp509I
| |AATT |
486 |
TspRI
| NNCA[CG]TGNN| |
925, 1150, 1206, 1645 |
Tth111I
| GACN|NNGTC |
1674 |
XhoI
| C|TCGAG |
154 |
XmnI
| GAANN|NNTTC |
919, 1822, 1846 |
Click here to view TAIR data
>AT1G59750.2 length:1989
ATGGCAGCTT CCAATCATTC ATCTGGTAAA CCTGGAGGAG TTTTAAGTGA | 50 |
TGCTTTATGT AGGGAGCTCT GGCATGCCTG TGCTGGACCT CTTGTAACCC | 100 |
TACCTCGTGA AGGGGAACGA GTTTATTATT TCCCTGAAGG CCACATGGAG | 150 |
CAGCTCGAGG CATCAATGCA CCAAGGTTTG GAGCAACAGA TGCCTTCCTT | 200 |
CAACCTCCCA TCTAAGATCC TCTGTAAAGT TATCAACATC CAGCGCAGGG | 250 |
CAGAGCCCGA GACTGACGAA GTATATGCGC AAATAACCTT ATTGCCAGAA | 300 |
CTGGATCAAA GCGAACCCAC TAGCCCAGAT GCCCCTGTTC AAGAACCTGA | 350 |
AAAGTGCACC GTACATTCAT TTTGCAAGAC ACTAACTGCT TCAGACACAA | 400 |
GCACACATGG TGGCTTCTCG GTGCTACGGA GACATGCAGA TGATTGTCTC | 450 |
CCACCCTTGG ATATGTCCCA ACAACCACCG TGGCAAGAAT TGGTTGCAAC | 500 |
TGATTTGCAC AATAGTGAAT GGCATTTTAG GCACATTTTC CGAGGCCAAC | 550 |
CAAGGCGTCA TTTGCTAACA ACTGGATGGA GTGTTTTTGT TAGCTCGAAG | 600 |
AAACTAGTGG CTGGTGATGC TTTCATATTC TTAAGGGGTG AGAATGAAGA | 650 |
GCTCCGAGTA GGTGTTAGGC GGCACATGAG ACAACAGACT AATATCCCGT | 700 |
CATCTGTCAT TTCAAGTCAT AGCATGCATA TTGGGGTCCT TGCAACAGCA | 750 |
GCTCATGCCA TTACAACAGG AACAATCTTT TCTGTCTTCT ACAAGCCAAG | 800 |
GACAAGTAGG TCAGAGTTTA TTGTGAGCGT CAATAGGTAT CTCGAAGCTA | 850 |
AGACCCAGAA GCTGTCTGTA GGCATGCGTT TCAAGATGAG ATTCGAGGGG | 900 |
GAAGAAGCTC CCGAGAAAAG GTTCAGTGGC ACAATAGTTG GTGTTCAGGA | 950 |
AAATAAGTCT TCGGTCTGGC ATGATTCTGA ATGGAGATCG CTAAAGGTTC | 1000 |
AATGGGACGA ACCCTCATCT GTATTTCGTC CTGAAAGAGT TTCACCTTGG | 1050 |
GAACTTGAGC CCCTAGTTGC AAATAGTACT CCGTCTTCAC AACCTCAGCC | 1100 |
TCCGCAAAGG AACAAACGAC CAAGACCTCC TGGTTTACCT TCACCAGCCA | 1150 |
CTGGTCCATC TGGTCCTGAT GGTGTGTGGA AATCCCCGGC AGACACTCCT | 1200 |
TCCTCAGTGC CATTATTCTC TCCTCCTGCC AAAGCTGCTA CGTTTGGTCA | 1250 |
TGGTGGGAAC AAATCATTTG GAGTATCTAT TGGATCAGCC TTTTGGCCCA | 1300 |
CCAATGCAGA TAGTGCAGCT GAATCCTTTG CTTCAGCGTT TAACAATGAA | 1350 |
TCTACTGAAA AGAAACAAAC TAATGGAAAT GTCTGTAGGC TTTTTGGGTT | 1400 |
TGAGCTAGTT GAAAATGTTA ATGTGGATGA ATGTTTCTCT GCTGCCTCTG | 1450 |
TGTCTGGTGC TGTCGCTGTA GATCAACCTG TCCCATCCAA CGAGTTTGAC | 1500 |
TCTGGCCAGC AATCTGAGCC ATTAAACATC AACCAATCTG ATATTCCTTC | 1550 |
GGGGAGTGGT GACCCTGAGA AATCCTCTTT GAGGTCTCCT CAAGAATCAC | 1600 |
AAAGTAGACA GATACGTAGC TGCACAAAGG TGCACATGCA AGGCAGTGCA | 1650 |
GTAGGCAGAG CTATTGATTT GACAAGGTCA GAGTGTTATG AAGATCTGTT | 1700 |
CAAGAAGCTG GAAGAGATGT TTGATATCAA GGGTGAACTC TTAGAATCTA | 1750 |
CCAAAAAATG GCAAGTCGTT TACACCGATG ATGAAGATGA CATGATGATG | 1800 |
GTTGGTGATG ATCCATGGAA TGAGTTCTGT GGAATGGTGA GGAAGATATT | 1850 |
CATCTACACA CCTGAGGAAG TGAAGAAACT TTCACCGAAG AACAAACTCG | 1900 |
CAGTCAATGC AAGGATGCAG CTCAAAGCTG ATGCAGAGGA AAATGGGAAT | 1950 |
ACAGAGGGCA GATCATCATC TATGGCGGGA TCAAGATGA | 2000 |
>AT1G59750.2 longest ORF length:662
MAASNHSSGK PGGVLSDALC RELWHACAGP LVTLPREGER VYYFPEGHME | 50 |
QLEASMHQGL EQQMPSFNLP SKILCKVINI QRRAEPETDE VYAQITLLPE | 100 |
LDQSEPTSPD APVQEPEKCT VHSFCKTLTA SDTSTHGGFS VLRRHADDCL | 150 |
PPLDMSQQPP WQELVATDLH NSEWHFRHIF RGQPRRHLLT TGWSVFVSSK | 200 |
KLVAGDAFIF LRGENEELRV GVRRHMRQQT NIPSSVISSH SMHIGVLATA | 250 |
AHAITTGTIF SVFYKPRTSR SEFIVSVNRY LEAKTQKLSV GMRFKMRFEG | 300 |
EEAPEKRFSG TIVGVQENKS SVWHDSEWRS LKVQWDEPSS VFRPERVSPW | 350 |
ELEPLVANST PSSQPQPPQR NKRPRPPGLP SPATGPSGPD GVWKSPADTP | 400 |
SSVPLFSPPA KAATFGHGGN KSFGVSIGSA FWPTNADSAA ESFASAFNNE | 450 |
STEKKQTNGN VCRLFGFELV ENVNVDECFS AASVSGAVAV DQPVPSNEFD | 500 |
SGQQSEPLNI NQSDIPSGSG DPEKSSLRSP QESQSRQIRS CTKVHMQGSA | 550 |
VGRAIDLTRS ECYEDLFKKL EEMFDIKGEL LESTKKWQVV YTDDEDDMMM | 600 |
VGDDPWNEFC GMVRKIFIYT PEEVKKLSPK NKLAVNARMQ LKADAEENGN | 650 |
TEGRSSSMAG SR | 700 |
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