fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G59750 ARF1 auxin response factor 1 (.1.2.3.4)

>AT1G59750.2 CDS map

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Uncut enzymes: AatII, Acc65I, AccII(FnuDII), AccIII(BspMII), AclI, AfeI, AflIII, AgeI, AhdI, AlwI, Aor51HI(Eco47III), ApaI, ApoI, AscI, AseI, AvrII, BaeI, BamHI, BanI, BbsI, BbvI, BcgI, BciVI, BclI, BglI, BlpI, BmrI, BpmI, BsaI, BsaWI, BsaXI, BseRI, BsgI, BsiEI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BspDI, BspEI, BspHI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrFI, BsrGI, BssHII, BstBI, BstUI, BstXI, BstZ17I, BtrI, Cfr10I, ClaI, DraI, EagI, EarI, EciI, EcoRI, FauI, FokI, FseI, HaeII, HgaI, HincII, HindIII, HpaI, HphI, Hpy99I, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, N.BstNBI, NaeI, , NarI, NdeI, NgoMIV, NheI, NotI, NruI, PI-PspI, PI-SceI(VDE), PacI, PciI, PleI, PmeI, PmlI, PshAI, PsiI, PspOMI, PstI, PvuI, RsrII, SacII, SalI, SapI, SbfI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SspI, StuI, SwaI, XbaI, XcmI, XmaI
Name Recognition sequence Cut positions
AccI GT|[AC][TG]AC 1604
AciI C|CGC 1100
AflII C|TTAAG 630
AluI AG|CT 4, 63, 150, 590, 648, 748, 844, 858, 904, 1231, 1315, 1401, 1616, 1657, 1704, 1917, 1924
AlwNI CAGNNN|CTG 859, 1148
ApaLI G|TGCAC 354, 1630
AvaI C|PyCGPuG 154, 256, 910
AvaII G|G[AT]CC 84, 734, 1152, 1161
BalI TGG|CCA 1503
BanII GPuGCPy|C 64, 253, 649, 1057
BbvCI CC|TCAGC 1094
BfaI C|TAG 318, 602, 1061, 1403
BglII A|GATCT 1692
BsaAI PyAC|GTPu 1613
BsaBI GATNN|NNATC 1849, 1965
BsaHI GPu|CGPyC 554
BsaJI C|CNNGG 171, 455, 478, 540, 550, 796, 1045, 1184, 1813
BsiHKAI G[AT]GC[AT]|C 64, 354, 649, 1630
BslI CCNNNNN|NNGG 108, 176, 245, 455, 916, 1149, 1579, 1756
BsoBI C|PyCGPuG 154, 256, 910
Bsp1286I G[GAT]GC[CAT]|C 64, 253, 354, 649, 1057, 1630
BsrI ACTGGN| 300, 571, 1150
BssKI |CCNGG 30, 1128, 1184
BssSI C|TCGTG 104
BstAPI GCANNNN|NTGC 188, 753, 1311, 1905
BstEII G|GTNACC 1559
BstF5I GGATGNN| 575, 1426, 1914
BstNI CC|[AT]GG 30, 1128
BstYI Pu|GATCPy 215, 1692
Bsu36I CC|TNAGG 1862
BtgI C|CPuPyGG 478, 1813
BtsI GCAGTGNN| 1645
Cac8I GCN|NGC 72, 722, 872, 1505
DdeI C|TNAG 211, 847, 1093, 1202, 1513, 1564, 1739, 1861
DpnI GA-CH3|TC 214, 302, 984, 1281, 1469, 1691, 1808, 1959, 1977
DpnII |GATC 214, 302, 984, 1281, 1469, 1691, 1808, 1959, 1977
DraIII CACNNN|GTG 407
DrdI GACNNNN|NNGTC 807
EaeI Py|GGCCPu 1503
EcoNI CCTNN|NNNAGG 108, 1579
EcoO109I PuG|GNCCPy 735
EcoRV GAT|ATC 1723
Fnu4HI GC|NGC 3, 149, 668, 747, 1233, 1314, 1440, 1618, 1916
FspI TGC|GCA 276
HaeIII GG|CC 137, 542, 1293, 1502
HhaI GCG|C 241, 275
HinP1I G|CGC 241, 275
HinfI G|ANTC 889, 972, 1320, 1347, 1497, 1593, 1743
HpaII C|CGG 1184
Hpy188I TCN|GA 390, 538, 652, 810, 975, 1512, 1536, 1677
HpyCH4III ACN|GT 357, 476
HpyCH4IV A|CGT 1238, 1612
HpyCH4V TG|CA 165, 353, 371, 433, 493, 504, 723, 739, 1066, 1303, 1312, 1619, 1629, 1635, 1645, 1906, 1914, 1930
MboI |GATC 214, 302, 984, 1281, 1469, 1691, 1808, 1959, 1977
MscI TGG|CCA 1503
MseI T|TAA 41, 629, 1338, 1416, 1520
MslI CAPyNN|NNPuTG 77, 437, 512, 1627, 1795
MspA1I C[AC]G|C[GT]G 1316
MspI C|CGG 1184
MwoI GCNNNNN|NNGC 188, 527, 560, 615, 747, 1233, 1311, 1514, 1905
NciI CC|[CG]GG 1184
NcoI C|CATGG 1813
NlaIII CATG| 71, 142, 404, 431, 673, 721, 752, 871, 968, 1247, 1633, 1789, 1812
NlaIV GGN|NCC 734
NsiI ATGCA|T 724
NspI PuCATG|Py 72, 432, 722, 872, 1634
PaeR7I C|TCGAG 154
PflFI GACN|NNGTC 1674
PflMI CCANNNN|NTGG 176, 1149, 1756
PpuMI PuG|G[AT]CCPy 735
PspGI |CC[AT]GG 30, 1128
PvuII CAG|CTG 1316
RsaI GT|AC 359, 1074
SacI GAGCT|C 64, 649
Sau3AI |GATC 214, 302, 984, 1281, 1469, 1691, 1808, 1959, 1977
Sau96I G|GNCC 84, 734, 1152, 1161, 1294
ScaI AGT|ACT 1075
ScrFI CC|NGG 30, 1128, 1184
SfcI C|TPuPyAG 866, 1383, 1466
SmlI C|TPyPuAG 154, 630, 1054, 1589
SnaBI TAC|GTA 1613
SpeI A|CTAGT 603
SphI GCATG|C 72, 722, 872
StyI C|C[AT][AT]GG 171, 455, 550, 796, 1045, 1813
Taqƒ¿I T|CGA 153, 593, 840, 891
TfiI G|A[AT]TC 889, 972, 1320, 1347, 1593, 1743
TliI C|TCGAG 154
TseI G|C[AT]GC 3, 149, 747, 1233, 1314, 1440, 1618, 1916
Tsp45I |GT[CG]AC 1558
Tsp509I |AATT 486
TspRI NNCA[CG]TGNN| 925, 1150, 1206, 1645
Tth111I GACN|NNGTC 1674
XhoI C|TCGAG 154
XmnI GAANN|NNTTC 919, 1822, 1846


Click here to view TAIR data

>AT1G59750.2 length:1989
ATGGCAGCTT CCAATCATTC ATCTGGTAAA CCTGGAGGAG TTTTAAGTGA 
50
TGCTTTATGT AGGGAGCTCT GGCATGCCTG TGCTGGACCT CTTGTAACCC 
100
TACCTCGTGA AGGGGAACGA GTTTATTATT TCCCTGAAGG CCACATGGAG 
150
CAGCTCGAGG CATCAATGCA CCAAGGTTTG GAGCAACAGA TGCCTTCCTT 
200
CAACCTCCCA TCTAAGATCC TCTGTAAAGT TATCAACATC CAGCGCAGGG 
250
CAGAGCCCGA GACTGACGAA GTATATGCGC AAATAACCTT ATTGCCAGAA 
300
CTGGATCAAA GCGAACCCAC TAGCCCAGAT GCCCCTGTTC AAGAACCTGA 
350
AAAGTGCACC GTACATTCAT TTTGCAAGAC ACTAACTGCT TCAGACACAA 
400
GCACACATGG TGGCTTCTCG GTGCTACGGA GACATGCAGA TGATTGTCTC 
450
CCACCCTTGG ATATGTCCCA ACAACCACCG TGGCAAGAAT TGGTTGCAAC 
500
TGATTTGCAC AATAGTGAAT GGCATTTTAG GCACATTTTC CGAGGCCAAC 
550
CAAGGCGTCA TTTGCTAACA ACTGGATGGA GTGTTTTTGT TAGCTCGAAG 
600
AAACTAGTGG CTGGTGATGC TTTCATATTC TTAAGGGGTG AGAATGAAGA 
650
GCTCCGAGTA GGTGTTAGGC GGCACATGAG ACAACAGACT AATATCCCGT 
700
CATCTGTCAT TTCAAGTCAT AGCATGCATA TTGGGGTCCT TGCAACAGCA 
750
GCTCATGCCA TTACAACAGG AACAATCTTT TCTGTCTTCT ACAAGCCAAG 
800
GACAAGTAGG TCAGAGTTTA TTGTGAGCGT CAATAGGTAT CTCGAAGCTA 
850
AGACCCAGAA GCTGTCTGTA GGCATGCGTT TCAAGATGAG ATTCGAGGGG 
900
GAAGAAGCTC CCGAGAAAAG GTTCAGTGGC ACAATAGTTG GTGTTCAGGA 
950
AAATAAGTCT TCGGTCTGGC ATGATTCTGA ATGGAGATCG CTAAAGGTTC 
1000
AATGGGACGA ACCCTCATCT GTATTTCGTC CTGAAAGAGT TTCACCTTGG 
1050
GAACTTGAGC CCCTAGTTGC AAATAGTACT CCGTCTTCAC AACCTCAGCC 
1100
TCCGCAAAGG AACAAACGAC CAAGACCTCC TGGTTTACCT TCACCAGCCA 
1150
CTGGTCCATC TGGTCCTGAT GGTGTGTGGA AATCCCCGGC AGACACTCCT 
1200
TCCTCAGTGC CATTATTCTC TCCTCCTGCC AAAGCTGCTA CGTTTGGTCA 
1250
TGGTGGGAAC AAATCATTTG GAGTATCTAT TGGATCAGCC TTTTGGCCCA 
1300
CCAATGCAGA TAGTGCAGCT GAATCCTTTG CTTCAGCGTT TAACAATGAA 
1350
TCTACTGAAA AGAAACAAAC TAATGGAAAT GTCTGTAGGC TTTTTGGGTT 
1400
TGAGCTAGTT GAAAATGTTA ATGTGGATGA ATGTTTCTCT GCTGCCTCTG 
1450
TGTCTGGTGC TGTCGCTGTA GATCAACCTG TCCCATCCAA CGAGTTTGAC 
1500
TCTGGCCAGC AATCTGAGCC ATTAAACATC AACCAATCTG ATATTCCTTC 
1550
GGGGAGTGGT GACCCTGAGA AATCCTCTTT GAGGTCTCCT CAAGAATCAC 
1600
AAAGTAGACA GATACGTAGC TGCACAAAGG TGCACATGCA AGGCAGTGCA 
1650
GTAGGCAGAG CTATTGATTT GACAAGGTCA GAGTGTTATG AAGATCTGTT 
1700
CAAGAAGCTG GAAGAGATGT TTGATATCAA GGGTGAACTC TTAGAATCTA 
1750
CCAAAAAATG GCAAGTCGTT TACACCGATG ATGAAGATGA CATGATGATG 
1800
GTTGGTGATG ATCCATGGAA TGAGTTCTGT GGAATGGTGA GGAAGATATT 
1850
CATCTACACA CCTGAGGAAG TGAAGAAACT TTCACCGAAG AACAAACTCG 
1900
CAGTCAATGC AAGGATGCAG CTCAAAGCTG ATGCAGAGGA AAATGGGAAT 
1950
ACAGAGGGCA GATCATCATC TATGGCGGGA TCAAGATGA
2000

>AT1G59750.2 longest ORF length:662
MAASNHSSGK PGGVLSDALC RELWHACAGP LVTLPREGER VYYFPEGHME 
50
QLEASMHQGL EQQMPSFNLP SKILCKVINI QRRAEPETDE VYAQITLLPE 
100
LDQSEPTSPD APVQEPEKCT VHSFCKTLTA SDTSTHGGFS VLRRHADDCL 
150
PPLDMSQQPP WQELVATDLH NSEWHFRHIF RGQPRRHLLT TGWSVFVSSK 
200
KLVAGDAFIF LRGENEELRV GVRRHMRQQT NIPSSVISSH SMHIGVLATA 
250
AHAITTGTIF SVFYKPRTSR SEFIVSVNRY LEAKTQKLSV GMRFKMRFEG 
300
EEAPEKRFSG TIVGVQENKS SVWHDSEWRS LKVQWDEPSS VFRPERVSPW 
350
ELEPLVANST PSSQPQPPQR NKRPRPPGLP SPATGPSGPD GVWKSPADTP 
400
SSVPLFSPPA KAATFGHGGN KSFGVSIGSA FWPTNADSAA ESFASAFNNE 
450
STEKKQTNGN VCRLFGFELV ENVNVDECFS AASVSGAVAV DQPVPSNEFD 
500
SGQQSEPLNI NQSDIPSGSG DPEKSSLRSP QESQSRQIRS CTKVHMQGSA 
550
VGRAIDLTRS ECYEDLFKKL EEMFDIKGEL LESTKKWQVV YTDDEDDMMM 
600
VGDDPWNEFC GMVRKIFIYT PEEVKKLSPK NKLAVNARMQ LKADAEENGN 
650
TEGRSSSMAG SR
700