fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G59750 ARF1 auxin response factor 1 (.1.2.3.4)

>AT1G59750.2 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, EcoRI, HindIII, HpaI, KpnI, NdeI, NheI, NotI, PacI, PstI, SalI, SmaI, XbaI
Name Recognition sequence Cut positions
BglII A|GATCT 1692
EcoRV GAT|ATC 1723
NcoI C|CATGG 1813
PvuII CAG|CTG 1316
SacI GAGCT|C 64, 649
SpeI A|CTAGT 603
StyI C|C[AT][AT]GG 171, 455, 550, 796, 1045, 1813
XhoI C|TCGAG 154


Click here to view TAIR data

>AT1G59750.2 length:1989
ATGGCAGCTT CCAATCATTC ATCTGGTAAA CCTGGAGGAG TTTTAAGTGA 
50
TGCTTTATGT AGGGAGCTCT GGCATGCCTG TGCTGGACCT CTTGTAACCC 
100
TACCTCGTGA AGGGGAACGA GTTTATTATT TCCCTGAAGG CCACATGGAG 
150
CAGCTCGAGG CATCAATGCA CCAAGGTTTG GAGCAACAGA TGCCTTCCTT 
200
CAACCTCCCA TCTAAGATCC TCTGTAAAGT TATCAACATC CAGCGCAGGG 
250
CAGAGCCCGA GACTGACGAA GTATATGCGC AAATAACCTT ATTGCCAGAA 
300
CTGGATCAAA GCGAACCCAC TAGCCCAGAT GCCCCTGTTC AAGAACCTGA 
350
AAAGTGCACC GTACATTCAT TTTGCAAGAC ACTAACTGCT TCAGACACAA 
400
GCACACATGG TGGCTTCTCG GTGCTACGGA GACATGCAGA TGATTGTCTC 
450
CCACCCTTGG ATATGTCCCA ACAACCACCG TGGCAAGAAT TGGTTGCAAC 
500
TGATTTGCAC AATAGTGAAT GGCATTTTAG GCACATTTTC CGAGGCCAAC 
550
CAAGGCGTCA TTTGCTAACA ACTGGATGGA GTGTTTTTGT TAGCTCGAAG 
600
AAACTAGTGG CTGGTGATGC TTTCATATTC TTAAGGGGTG AGAATGAAGA 
650
GCTCCGAGTA GGTGTTAGGC GGCACATGAG ACAACAGACT AATATCCCGT 
700
CATCTGTCAT TTCAAGTCAT AGCATGCATA TTGGGGTCCT TGCAACAGCA 
750
GCTCATGCCA TTACAACAGG AACAATCTTT TCTGTCTTCT ACAAGCCAAG 
800
GACAAGTAGG TCAGAGTTTA TTGTGAGCGT CAATAGGTAT CTCGAAGCTA 
850
AGACCCAGAA GCTGTCTGTA GGCATGCGTT TCAAGATGAG ATTCGAGGGG 
900
GAAGAAGCTC CCGAGAAAAG GTTCAGTGGC ACAATAGTTG GTGTTCAGGA 
950
AAATAAGTCT TCGGTCTGGC ATGATTCTGA ATGGAGATCG CTAAAGGTTC 
1000
AATGGGACGA ACCCTCATCT GTATTTCGTC CTGAAAGAGT TTCACCTTGG 
1050
GAACTTGAGC CCCTAGTTGC AAATAGTACT CCGTCTTCAC AACCTCAGCC 
1100
TCCGCAAAGG AACAAACGAC CAAGACCTCC TGGTTTACCT TCACCAGCCA 
1150
CTGGTCCATC TGGTCCTGAT GGTGTGTGGA AATCCCCGGC AGACACTCCT 
1200
TCCTCAGTGC CATTATTCTC TCCTCCTGCC AAAGCTGCTA CGTTTGGTCA 
1250
TGGTGGGAAC AAATCATTTG GAGTATCTAT TGGATCAGCC TTTTGGCCCA 
1300
CCAATGCAGA TAGTGCAGCT GAATCCTTTG CTTCAGCGTT TAACAATGAA 
1350
TCTACTGAAA AGAAACAAAC TAATGGAAAT GTCTGTAGGC TTTTTGGGTT 
1400
TGAGCTAGTT GAAAATGTTA ATGTGGATGA ATGTTTCTCT GCTGCCTCTG 
1450
TGTCTGGTGC TGTCGCTGTA GATCAACCTG TCCCATCCAA CGAGTTTGAC 
1500
TCTGGCCAGC AATCTGAGCC ATTAAACATC AACCAATCTG ATATTCCTTC 
1550
GGGGAGTGGT GACCCTGAGA AATCCTCTTT GAGGTCTCCT CAAGAATCAC 
1600
AAAGTAGACA GATACGTAGC TGCACAAAGG TGCACATGCA AGGCAGTGCA 
1650
GTAGGCAGAG CTATTGATTT GACAAGGTCA GAGTGTTATG AAGATCTGTT 
1700
CAAGAAGCTG GAAGAGATGT TTGATATCAA GGGTGAACTC TTAGAATCTA 
1750
CCAAAAAATG GCAAGTCGTT TACACCGATG ATGAAGATGA CATGATGATG 
1800
GTTGGTGATG ATCCATGGAA TGAGTTCTGT GGAATGGTGA GGAAGATATT 
1850
CATCTACACA CCTGAGGAAG TGAAGAAACT TTCACCGAAG AACAAACTCG 
1900
CAGTCAATGC AAGGATGCAG CTCAAAGCTG ATGCAGAGGA AAATGGGAAT 
1950
ACAGAGGGCA GATCATCATC TATGGCGGGA TCAAGATGA
2000

>AT1G59750.2 longest ORF length:662
MAASNHSSGK PGGVLSDALC RELWHACAGP LVTLPREGER VYYFPEGHME 
50
QLEASMHQGL EQQMPSFNLP SKILCKVINI QRRAEPETDE VYAQITLLPE 
100
LDQSEPTSPD APVQEPEKCT VHSFCKTLTA SDTSTHGGFS VLRRHADDCL 
150
PPLDMSQQPP WQELVATDLH NSEWHFRHIF RGQPRRHLLT TGWSVFVSSK 
200
KLVAGDAFIF LRGENEELRV GVRRHMRQQT NIPSSVISSH SMHIGVLATA 
250
AHAITTGTIF SVFYKPRTSR SEFIVSVNRY LEAKTQKLSV GMRFKMRFEG 
300
EEAPEKRFSG TIVGVQENKS SVWHDSEWRS LKVQWDEPSS VFRPERVSPW 
350
ELEPLVANST PSSQPQPPQR NKRPRPPGLP SPATGPSGPD GVWKSPADTP 
400
SSVPLFSPPA KAATFGHGGN KSFGVSIGSA FWPTNADSAA ESFASAFNNE 
450
STEKKQTNGN VCRLFGFELV ENVNVDECFS AASVSGAVAV DQPVPSNEFD 
500
SGQQSEPLNI NQSDIPSGSG DPEKSSLRSP QESQSRQIRS CTKVHMQGSA 
550
VGRAIDLTRS ECYEDLFKKL EEMFDIKGEL LESTKKWQVV YTDDEDDMMM 
600
VGDDPWNEFC GMVRKIFIYT PEEVKKLSPK NKLAVNARMQ LKADAEENGN 
650
TEGRSSSMAG SR
700