fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G59750 ARF1 auxin response factor 1 (.1.2.3.4)

>AT1G59750.3 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, EcoRI, HindIII, HpaI, KpnI, NdeI, NheI, NotI, PacI, PstI, SalI, SmaI, XbaI
Name Recognition sequence Cut positions
BglII A|GATCT 1701
EcoRV GAT|ATC 1732
NcoI C|CATGG 1822
PvuII CAG|CTG 1325
SacI GAGCT|C 64, 649
SpeI A|CTAGT 603
StyI C|C[AT][AT]GG 171, 455, 550, 796, 1045, 1822
XhoI C|TCGAG 154


Click here to view TAIR data

>AT1G59750.3 length:1998
ATGGCAGCTT CCAATCATTC ATCTGGTAAA CCTGGAGGAG TTTTAAGTGA 
50
TGCTTTATGT AGGGAGCTCT GGCATGCCTG TGCTGGACCT CTTGTAACCC 
100
TACCTCGTGA AGGGGAACGA GTTTATTATT TCCCTGAAGG CCACATGGAG 
150
CAGCTCGAGG CATCAATGCA CCAAGGTTTG GAGCAACAGA TGCCTTCCTT 
200
CAACCTCCCA TCTAAGATCC TCTGTAAAGT TATCAACATC CAGCGCAGGG 
250
CAGAGCCCGA GACTGACGAA GTATATGCGC AAATAACCTT ATTGCCAGAA 
300
CTGGATCAAA GCGAACCCAC TAGCCCAGAT GCCCCTGTTC AAGAACCTGA 
350
AAAGTGCACC GTACATTCAT TTTGCAAGAC ACTAACTGCT TCAGACACAA 
400
GCACACATGG TGGCTTCTCG GTGCTACGGA GACATGCAGA TGATTGTCTC 
450
CCACCCTTGG ATATGTCCCA ACAACCACCG TGGCAAGAAT TGGTTGCAAC 
500
TGATTTGCAC AATAGTGAAT GGCATTTTAG GCACATTTTC CGAGGCCAAC 
550
CAAGGCGTCA TTTGCTAACA ACTGGATGGA GTGTTTTTGT TAGCTCGAAG 
600
AAACTAGTGG CTGGTGATGC TTTCATATTC TTAAGGGGTG AGAATGAAGA 
650
GCTCCGAGTA GGTGTTAGGC GGCACATGAG ACAACAGACT AATATCCCGT 
700
CATCTGTCAT TTCAAGTCAT AGCATGCATA TTGGGGTCCT TGCAACAGCA 
750
GCTCATGCCA TTACAACAGG AACAATCTTT TCTGTCTTCT ACAAGCCAAG 
800
GACAAGTAGG TCAGAGTTTA TTGTGAGCGT CAATAGGTAT CTCGAAGCTA 
850
AGACCCAGAA GCTGTCTGTA GGCATGCGTT TCAAGATGAG ATTCGAGGGG 
900
GAAGAAGCTC CCGAGAAAAG GTTCAGTGGC ACAATAGTTG GTGTTCAGGA 
950
AAATAAGTCT TCGGTCTGGC ATGATTCTGA ATGGAGATCG CTAAAGGTTC 
1000
AATGGGACGA ACCCTCATCT GTATTTCGTC CTGAAAGAGT TTCACCTTGG 
1050
GAACTTGAGC CCCTAGTTGC AAATAGTACT CCGTCTTCAC AACCTCAGCC 
1100
TCCGCAAAGG AACAAACGAC CAAGACCTCC TGGTTTACCT TCACCAGCCA 
1150
CTGGTCCATC TGGTCCTGTT ACTCCAGATG GTGTGTGGAA ATCCCCGGCA 
1200
GACACTCCTT CCTCAGTGCC ATTATTCTCT CCTCCTGCCA AAGCTGCTAC 
1250
GTTTGGTCAT GGTGGGAACA AATCATTTGG AGTATCTATT GGATCAGCCT 
1300
TTTGGCCCAC CAATGCAGAT AGTGCAGCTG AATCCTTTGC TTCAGCGTTT 
1350
AACAATGAAT CTACTGAAAA GAAACAAACT AATGGAAATG TCTGTAGGCT 
1400
TTTTGGGTTT GAGCTAGTTG AAAATGTTAA TGTGGATGAA TGTTTCTCTG 
1450
CTGCCTCTGT GTCTGGTGCT GTCGCTGTAG ATCAACCTGT CCCATCCAAC 
1500
GAGTTTGACT CTGGCCAGCA ATCTGAGCCA TTAAACATCA ACCAATCTGA 
1550
TATTCCTTCG GGGAGTGGTG ACCCTGAGAA ATCCTCTTTG AGGTCTCCTC 
1600
AAGAATCACA AAGTAGACAG ATACGTAGCT GCACAAAGGT GCACATGCAA 
1650
GGCAGTGCAG TAGGCAGAGC TATTGATTTG ACAAGGTCAG AGTGTTATGA 
1700
AGATCTGTTC AAGAAGCTGG AAGAGATGTT TGATATCAAG GGTGAACTCT 
1750
TAGAATCTAC CAAAAAATGG CAAGTCGTTT ACACCGATGA TGAAGATGAC 
1800
ATGATGATGG TTGGTGATGA TCCATGGAAT GAGTTCTGTG GAATGGTGAG 
1850
GAAGATATTC ATCTACACAC CTGAGGAAGT GAAGAAACTT TCACCGAAGA 
1900
ACAAACTCGC AGTCAATGCA AGGATGCAGC TCAAAGCTGA TGCAGAGGAA 
1950
AATGGGAATA CAGAGGGCAG ATCATCATCT ATGGCGGGAT CAAGATGA
2000

>AT1G59750.3 longest ORF length:665
MAASNHSSGK PGGVLSDALC RELWHACAGP LVTLPREGER VYYFPEGHME 
50
QLEASMHQGL EQQMPSFNLP SKILCKVINI QRRAEPETDE VYAQITLLPE 
100
LDQSEPTSPD APVQEPEKCT VHSFCKTLTA SDTSTHGGFS VLRRHADDCL 
150
PPLDMSQQPP WQELVATDLH NSEWHFRHIF RGQPRRHLLT TGWSVFVSSK 
200
KLVAGDAFIF LRGENEELRV GVRRHMRQQT NIPSSVISSH SMHIGVLATA 
250
AHAITTGTIF SVFYKPRTSR SEFIVSVNRY LEAKTQKLSV GMRFKMRFEG 
300
EEAPEKRFSG TIVGVQENKS SVWHDSEWRS LKVQWDEPSS VFRPERVSPW 
350
ELEPLVANST PSSQPQPPQR NKRPRPPGLP SPATGPSGPV TPDGVWKSPA 
400
DTPSSVPLFS PPAKAATFGH GGNKSFGVSI GSAFWPTNAD SAAESFASAF 
450
NNESTEKKQT NGNVCRLFGF ELVENVNVDE CFSAASVSGA VAVDQPVPSN 
500
EFDSGQQSEP LNINQSDIPS GSGDPEKSSL RSPQESQSRQ IRSCTKVHMQ 
550
GSAVGRAIDL TRSECYEDLF KKLEEMFDIK GELLESTKKW QVVYTDDEDD 
600
MMMVGDDPWN EFCGMVRKIF IYTPEEVKKL SPKNKLAVNA RMQLKADAEE 
650
NGNTEGRSSS MAGSR
700