fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G60250 B-box zinc finger family protein (.1)

>AT1G60250.1 genomic map

>>Show CDS map




Uncut enzymes: AatII, AccIII(BspMII), AfeI, AlwI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AvrII, BaeI, BamHI, BanII, BbsI, BbvCI, BbvI, BcgI, BciVI, BglI, BlpI, BmrI, BpmI, BsaHI, BsaI, BsaXI, BseRI, BsgI, BsmAI, BsmBI, BsmFI, BspEI, BspMI, BsrBI, BsrGI, BssHII, BssSI, BstXI, Bsu36I, BtrI, BtsI, DraIII, EagI, EarI, EciI, EcoNI, EcoO109I, FauI, FokI, FseI, HgaI, HphI, I-CeuI, I-SceI, KasI, MboII, MluI, MlyI, MnlI, MspA1I, NaeI, , NarI, NgoMIV, NotI, NruI, NsiI, PI-PspI, PI-SceI(VDE), PaeR7I, PflFI, PflMI, PleI, PmeI, PpuMI, PshAI, PspOMI, PstI, PvuI, PvuII, RsrII, SacI, SacII, SalI, SapI, SbfI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SnaBI, SwaI, TliI, Tth111I, XcmI, XhoI
Name Recognition sequence Cut positions
Acc65I G|GTACC 5709
AccI GT|[AC][TG]AC 990, 1153, 1635, 2461, 4023
AccII(FnuDII) CG|CG 4541
AciI C|CGC 44, 1501, 3263, 4548
AclI AA|CGTT 5965
AflII C|TTAAG 1876, 3404, 5084
AflIII A|CPuPyGT 336, 853, 1208, 1863, 2712, 3370, 4019, 4027, 4079, 4120, 5999
AgeI A|CCGGT 4636
AhdI GACNNN|NNGTC 2998
AluI AG|CT 544, 584, 642, 701, 980, 1107, 1760, 1878, 2416, 2441, 2771, 3163, 3291, 3356, 3421, 3835, 4058, 4389, 4451, 4567, 4774
AlwNI CAGNNN|CTG 3087
ApoI Pu|AATTPy 164, 603, 1356, 1437, 2077, 2247, 2286, 2816, 2986, 3029, 3128, 3299, 3560, 3721, 3924, 4459, 5135, 5334, 5497, 6090
AseI AT|TAAT 1184, 1306, 2496, 3475, 3703, 4703, 5061, 5415
AvaI C|PyCGPuG 487, 526
AvaII G|G[AT]CC 366, 1443, 1923
BalI TGG|CCA 4240
BanI G|GPyPuCC 4546, 5709
BclI T|GATCA 800, 3394, 4288, 6152
BfaI C|TAG 102, 316, 405, 668, 1031, 1043, 1331, 2423, 2732, 2846, 3042, 3165, 4716, 4988, 4999, 6033, 6179
BglII A|GATCT 514, 1872, 2841, 5520, 5860
BsaAI PyAC|GTPu 337, 2711, 4121, 5260
BsaBI GATNN|NNATC 863, 2830, 5950
BsaJI C|CNNGG 486, 527, 1193, 1766, 1920, 2241, 2404, 3137, 3887, 4396, 5194, 6016
BsaWI [AT]|CCGG[AT] 4518, 4636
BsiEI CGPuPy|CG 4516, 6138, 6167
BsiHKAI G[AT]GC[AT]|C 2623
BsiWI C|GTACG 4123
BslI CCNNNNN|NNGG 3498, 3605
BsmI GAATGCN| 2605
BsoBI C|PyCGPuG 487, 526
Bsp1286I G[GAT]GC[CAT]|C 2623
BspDI AT|CGAT 5077, 5953
BspHI T|CATGA 3002
BspT107I(HgiCI) G|G[TC][AG]CC 4546, 5709
BsrDI GCAATGNN| 4432
BsrFI Pu|CCGGPy 1070, 4636
BsrI ACTGGN| 2228
BssKI |CCNGG 486, 1505, 1523, 2102, 3137, 5193, 6169
BstAPI GCANNNN|NTGC 1533, 1865
BstBI TT|CGAA 171, 4456
BstEII G|GTNACC 4359
BstF5I GGATGNN| 1251, 1264, 1771, 4189, 4423, 4522, 4945, 5199, 6110
BstNI CC|[AT]GG 1505, 3137
BstUI CG|CG 4541
BstYI Pu|GATCPy 514, 1872, 2841, 3596, 5520, 5860, 6039
BstZ17I GTA|TAC 1635
BtgI C|CPuPyGG 1193, 2404, 4396, 6016
Cac8I GCN|NGC 547, 1595, 3166, 3255
Cfr10I [AG]|CCGG[TC] 1070, 4636
ClaI AT|CGAT 5077, 5953
DdeI C|TNAG 582, 1000, 1236, 1290, 1911, 1991, 2114, 2949, 3143, 3227, 3419, 3760, 4797, 5854, 5863
DpnI GA-CH3|TC 513, 622, 799, 1091, 1228, 1871, 1971, 2723, 2824, 2840, 3393, 3586, 3595, 3651, 4040, 4287, 5519, 5859, 5950, 6038, 6151, 6215
DpnII |GATC 513, 622, 799, 1091, 1228, 1871, 1971, 2723, 2824, 2840, 3393, 3586, 3595, 3651, 4040, 4287, 5519, 5859, 5950, 6038, 6151, 6215
DraI TTT|AAA 351, 1905, 2330, 3112, 3921, 5561
DrdI GACNNNN|NNGTC 5681
EaeI Py|GGCCPu 4240
EcoRI G|AATTC 4459, 6090
EcoRV GAT|ATC 4952
Fnu4HI GC|NGC 496, 644, 2055, 3290, 3324, 3355, 4341, 4391, 4548, 4613, 4651
FspI TGC|GCA 1592
HaeII PuGCGC|Py 5727
HaeIII GG|CC 1573, 3139, 4239, 5970
HhaI GCG|C 1591, 2124, 3352, 5726
HinP1I G|CGC 1591, 2124, 3352, 5726
HincII GTPy|PuAC 1140, 1269, 1746
HindIII A|AGCTT 585, 702, 4568
HinfI G|ANTC 134, 532, 572, 1014, 1748, 1819, 2001, 2038, 2144, 2150, 2850, 2903, 4497, 4524, 4662, 6011, 6130, 6176
HpaI GTT|AAC 1140
HpaII C|CGG 486, 1069, 1522, 2102, 4517, 4635, 5192, 6168
Hpy188I TCN|GA 23, 128, 516, 541, 797, 1011, 1413, 1992, 2004, 2025, 2115, 2147, 2289, 2726, 2870, 3396, 3598, 5428, 5986, 6058, 6080, 6218
Hpy99I CG[AT]CG| 500, 5927
HpyCH4III ACN|GT 250, 361, 443, 721, 1156, 1216, 1337, 1832, 2955, 4529, 5706, 6118
HpyCH4IV A|CGT 336, 501, 2710, 4120, 4124, 5259, 5504, 5899, 5958, 5964, 5997
HpyCH4V TG|CA 77, 114, 253, 494, 628, 1695, 1780, 1866, 2657, 2924, 3325, 4112, 4292, 4427, 4581, 5378, 5492, 6005
KpnI GGTAC|C 5709
MboI |GATC 513, 622, 799, 1091, 1228, 1871, 1971, 2723, 2824, 2840, 3393, 3586, 3595, 3651, 4040, 4287, 5519, 5859, 5950, 6038, 6151, 6215
MfeI C|AATTG 4225, 4408
MscI TGG|CCA 4240
MseI T|TAA 350, 711, 1056, 1139, 1183, 1305, 1309, 1736, 1875, 1904, 2013, 2273, 2329, 2495, 2534, 2690, 3037, 3111, 3318, 3337, 3403, 3474, 3562, 3591, 3628, 3702, 3741, 3794, 3920, 4063, 4624, 4702, 4817, 4891, 4984, 5047, 5060, 5069, 5083, 5101, 5131, 5151, 5161, 5355, 5414, 5512, 5538, 5546, 5560, 5640, 5838, 6075, 6098, 6185, 6237
MslI CAPyNN|NNPuTG 4290, 4353
MspI C|CGG 486, 1069, 1522, 2102, 4517, 4635, 5192, 6168
MwoI GCNNNNN|NNGC 1533, 1703, 1865, 2779, 4145, 4511, 4580, 5928
N.BstNBI GAGTCNNNN|N 1824
NciI CC|[CG]GG 486, 1523, 2102, 5193, 6169
NcoI C|CATGG 1193
NdeI CA|TATG 2129, 4298
NheI G|CTAGC 3166
NlaIII CATG| 852, 1192, 1207, 1862, 2119, 2516, 2599, 3001, 3147, 3254, 3369, 3998, 4018, 4026, 4078, 4110, 4204, 4268, 4284, 4290, 4305, 4347, 5339, 5368
NlaIV GGN|NCC 1714, 1916, 4546, 5709
NspI PuCATG|Py 853, 1208, 1863, 3255, 3370, 4019, 4027, 4079, 4111, 4348
PacI TTAAT|TAA 1309
PciI A|CATGT 853, 1208, 1863, 3370, 4019, 4027, 4079
PmlI CAC|GTG 337
PsiI TTA|TAA 1101, 2193, 2321, 3969, 4832, 6198
PspGI |CC[AT]GG 1505, 3137
RsaI GT|AC 414, 1626, 2556, 2784, 2805, 2865, 2952, 3132, 3415, 4122, 5252, 5323, 5708, 5745, 6001
Sau3AI |GATC 513, 622, 799, 1091, 1228, 1871, 1971, 2723, 2824, 2840, 3393, 3586, 3595, 3651, 4040, 4287, 5519, 5859, 5950, 6038, 6151, 6215
Sau96I G|GNCC 366, 1443, 1923
ScaI AGT|ACT 2953, 3416
ScrFI CC|NGG 486, 1505, 1523, 2102, 3137, 5193, 6169
SfcI C|TPuPyAG 1155
SmaI CCC|GGG 487
SmlI C|TPyPuAG 33, 61, 1245, 1876, 2470, 2880, 3404, 4005, 4251, 5084
SpeI A|CTAGT 3043
SphI GCATG|C 3255
SspI AAT|ATT 175, 207, 397, 3984, 5109, 5187, 5418, 5550, 5584
StuI AGG|CCT 3140
StyI C|C[AT][AT]GG 1193, 1766, 1920, 2241, 3887
Taqƒ¿I T|CGA 170, 2768, 4149, 4455, 4557, 4938, 5076, 5653, 5913, 5952
TfiI G|A[AT]TC 134, 532, 572, 1014, 2001, 2038, 2144, 2903, 4497, 4524, 4662, 6011, 6130, 6176
TseI G|C[AT]GC 496, 644, 3290, 3324, 3355, 4341, 4391
Tsp45I |GT[CG]AC 388, 911, 959, 2064, 2133, 4013, 4082, 4358, 4532, 6162
Tsp509I |AATT 74, 111, 163, 219, 576, 602, 783, 803, 1103, 1181, 1307, 1355, 1436, 1852, 2076, 2195, 2246, 2285, 2497, 2688, 2815, 2921, 2985, 3028, 3035, 3099, 3127, 3298, 3476, 3559, 3655, 3674, 3700, 3720, 3732, 3811, 3923, 3960, 4224, 4407, 4458, 4626, 4704, 4819, 4834, 4931, 5010, 5032, 5058, 5062, 5099, 5129, 5134, 5153, 5224, 5274, 5333, 5406, 5496, 5524, 5603, 5633, 5685, 5693, 5933, 6089
TspRI NNCA[CG]TGNN| 253, 364, 1217, 1392, 2823, 5873
XbaI T|CTAGA 4717, 5000
XmaI C|CCGGG 487
XmnI GAANN|NNTTC 224, 577, 5635


Click here to view TAIR data

>AT1G60250 genomic sequence (4001-4756,) length:6255
ccaaactctc tgctcattgg tattctgatt ttctcaaggg caaaaccgct 
50
tttcttggtt ctcaaggcat cacggaattg cagagcaacc tctctcctta 
100
ctcctagtaa tgaattgcaa taatatattc tgatgaatcc gttgtcataa 
150
tgagaagcgt aataaattca ttcgaatatt atttgttttc atttatttta 
200
caatcaaata ttgataaccg aattgcttct tatttcaaaa tggactgaaa 
250
acagtgcaaa aaaatcccaa taatgtatga aaaactcaaa actaaaggct 
300
ttttttttgt aaaaacgcta gagttattta tttcaacacg tgttacacac 
350
tttaaataaa tacagtggac catatacttt gtttcttcgt cacacaaata 
400
ttatctctag tagcagtaca agagaaagag cattagaaat ggaacagttt 
450
tttgctctgt ttaccatttt tctatctttt gctttccccg ggagatgcag 
500
cgacgttttc agcagatctg atttccccga gggattcctc ttcggagctg 
550
gcacttctgc ttatcaggtt tggaatcaat tcctaagctt tttttttttt 
600
tggaattttt gaaccaaatg tttgatctct gcaagtggga aggagctgct 
650
gcggaagatg gaaggaaacc tagcgtgtgg gacactcttt gttactctcg 
700
taagctttca ttttaacata aactgttatt agcatcagta tttgaacaga 
750
tatatttaga aacagagatt agttgttgcc tttgaattat ttatgcttct 
800
gatcaatttt ttcgtttcta acttttcagg taacattggt aacggagatg 
850
taacatgtga tgggtatcac aagtataagg ttctttctct tttctgcttt 
900
actctctcct tgtgactact actacattat atagtttatt catcaagcct 
950
gacttcattg tgactttgta ggaagatgtg aagctgatgg tagacactaa 
1000
cttagatgcc ttcagattct ctatatcttg gtctaggcta atacctagta 
1050
agccttctta aacatttatg ccggttttgt ttcacttgaa gggatcaact 
1100
ttataattag ctcttatctc attagatgga agaggctctg ttaaccaaaa 
1150
gggtctacag ttctacaaga acctcatcag cgaattaata acccatggga 
1200
ttgaaccaca tgttacactg tatcactacg atcatcctca gtatcttgag 
1250
gatgaatatg gaggatgggt caacaatatg atgatgtagg ctaagaaaaa 
1300
acaacattaa ttaaatctct tttacagatt ttctaggaca gtattatgtg 
1350
aaactaaatt tggtgttatt tggcattgta gcaaagactt cactgcttat 
1400
gtagatgttt gtttcagaga gtttgggaac tatgtcaaat tctggaccac 
1450
tatcaatgag gctaatgtat ttactattgg aggttacaac gatggggata 
1500
caccgcctgg tcgttgttct ttaccgggca aaaactgctt gttagggaac 
1550
tcttctactg aaacatatat tgtaggccat aacttacttc ttgcgcacgc 
1600
ctctgcttca agactatata agcaaaagta caaggtatac ttgcttatac 
1650
ataaccctct tttgaatgta taagaagcaa catactatat acaatgtgca 
1700
ggataagcag ggtggttcca taggctttgg cttatattta atggggttga 
1750
ctccttctac aagctccaag gatgatgcca ttgcaactca aagagccaaa 
1800
gatttctatt tcggttggtg agtcaggcac aaacagttct aaaaggtttt 
1850
tcaaattggg caacatgtgc aagatcttaa gctgaaaaga aagaaaatct 
1900
gctctttaaa actcaggttc cttggacctc ttatatttgg agactatcca 
1950
gatacaatga aaagaaccat tggatcaaga ctgccagttt tctcagagga 
2000
agaatcagaa caagttaaag gctcatctga cttcatagga atcaatcatt 
2050
agtttgcggc ttctgtcaca aacatcaaat tcaaaccttc tatttctgga 
2100
aacccggact tctactcaga catgggcgca tatgtgactt gtatgaatca 
2150
gactcattct tttgtataac aaaaaaaaaa cctcttttat ctttataatt 
2200
tgttactact cattttttct tcgttttact ggttagaaga ccttgggaat 
2250
ttttcagtta tagaggtaag agttttaagg ctaccaaatt cagatacaaa 
2300
acaccttata ttccttgaca ttataagtct ttaaacaaat aagtgctact 
2350
aatctatctt tcattgtttg ttttgttttt gtttggacaa gtatcctgtt 
2400
gctccgtgga ctatggaagc tgtcctagag tatataaagc agagctatga 
2450
caatcctcct gtctacattc ttgagaatgg tcaatctctt ctatgattaa 
2500
tttattcgtc tctccctcat gtttttgatt tggacttaaa atgtcatata 
2550
caaacaggta caccgatgac gcaacacaag gatacacata gggtggaata 
2600
catgaatgct tacattggtg gtgtgctcaa atccataagg taagtaaagt 
2650
ttttttattg catcttttct tctcttatct tgttcgtgta attaaggaaa 
2700
aggacattgc tacgtgtagg aatggatcag acactagagg ctattttgta 
2750
tggtcattta tggatttatt cgagcttata gggcggtacg attatggtta 
2800
tggattgtac tctgtaaatt tcagtgatcc acatcgcaag agatctccta 
2850
gactctctgc tcattggtac tctgattttc tcaagggcaa aacttctttt 
2900
cttgattcca aaggcatcaa ggaattgcag agcaacttct cttcttcctc 
2950
ttagtactgt gatgaaataa ctcttatgtt ctactgaatt tagactactt 
3000
gtcatgagag ccacttcttt ttttctataa attctaaatt aaactagttt 
3050
agtaacttta cacgacaaaa taatgagaaa tcacagatgc tgaatacaag 
3100
aattgcccgt ttttaaatgc taaaaagaaa ttcgtaccca ggcctaagca 
3150
tgacatcaag ttcaagctag cattgtatca aaaaaccata ttacagaacc 
3200
atacaaacac ttgaatagtt agtaactctt agcaaagttg ttttttacac 
3250
aaaagcatgc taatccgcat caaaaaagag acacaaaaga gcagcttcaa 
3300
attcatatac catccattgt taaggctgca tttccacatt aaaaagaaca 
3350
aaagcgcagc ttcctaccta catgtgaaaa tcataacaaa gactgatcag 
3400
aaacttaagt atgtaagtac taagctaaca atctaaactc taaagcaaaa 
3450
tagttataca aaaaaaaaaa actcattaat ttacctgttt gtcccccgtt 
3500
tggttatgtt gataaagttg ggatattttt ttcttcaaaa aaaaaagatt 
3550
tctacatcaa aatttaagaa acgacattat tcttactgat ctttaagatc 
3600
cgataaaagg aaaaaaaaaa actttattct taacaaaaaa atgagaaaca 
3650
aggatcaatt tttcaaatat catataatta tcttttttct ttcttattct 
3700
caattaataa atgtaatgtt gaattttgag aataatttat agttaaagat 
3750
aagtatataa cttagtaaaa tatatccttc tacataatca gtttgttaaa 
3800
aaaaaatcta caaattagaa actccatcta aatacgagct tcacagattg 
3850
tttcacagag aaaacaaaac tttggcttcc ttctctcctt ggttcgtgta 
3900
agttgaatgt ttttttttat tttaaattcg tgtttcttct cttccgtttt 
3950
gcgaagttga taattttgtt ataatcttat atgaatattt ttcaggaaac 
4000
ATGGCTCAAG TTTGTCACAC ATGTAGACAT GTAACAGCCG TGATCCATTG 
4050
TGTTACAGAA GCTCTTAACT TCTGCCTTAC ATGTGACAAC CTTCGCCATC 
4100
ATAATAACAT ACATGCAGAA CACGTACGTT ACCAACTTTG CGATAACTGC 
4150
TCGATGTATC CGTCTATACT TTTCTGTTAT GAGGACGGGA TGGTTCTTTG 
4200
TCAATCATGT TATTCGCACC ATTACAATTG TGCCACTAAT GGCCATCAAA 
4250
CTCAAGTCGT CTTCGCTAAC ATGAATAATC AACACCATGA TCATGCACAT 
4300
ATGCCTCATG TGGTTCACCA TAACAATAAC AATAATCATC AGCAGCAGCA 
4350
TGTGGGTGGT CACCAAAGAA GAGCAGAGAT GTTTGAGAGG AGCTGCCACG 
4400
GGGATAACAA TTGCGAGAGA TGGATGTTTG CAATGAGATG TGAGTTATGC 
4450
GTAGCTTCGA ATTCAAATGC TGTTGTTTAT TGTCCTACAC ACAACCAGAT 
4500
TCTATGCGAT AGTTGCGACC GGATGATTCA CAGTCACGAG GACGCGGTGC 
4550
CGCCGCATTC GAGGTGTAAG CTTTGCGTAA TCTGCAAGAG ACCTTCTCGC 
4600
CGTTTTCTCA TTGGCGGCTA TCAGTTTAAT TTCCCACCGG TTCATCCTCC 
4650
TGCGGCAGAG GGGATTCCAG TTACGCCCCC AACAGAACTA CCTCAACAAG 
4700
ATATTAATTA TGATTATCTA GATGATGTTG ATGATTTTTC TTGGTTTGGT 
4750
AGGTGAatag aaaatcgtct tctttagctt tttatttatg tgtgtttctt 
4800
agagttttcg ttaggggttt aattcttggt gttataattg cttctggatt 
4850
tgaaaaagaa aagaagaaga aaaaaaaaac aatcagttgg atttaatatg 
4900
ttagaagaaa ataaaatgtc aaaactaact ccaatttgtt cgaggatgga 
4950
agatatcata tcttgatgta tgtatatctc atcatttaac tagaaactat 
5000
ctagaaacca caattaccga aaaaacataa aacaattttg ctaaaatgtt 
5050
aagaacacaa attaatttga ttaacaatcg atgcttaagg ggtttatagg 
5100
aattaaataa tatttttttt tcaacaataa aattaaattt cactttgcga 
5150
ttttaatttt atttaagaaa gtcaagaacc aactccaata tttccgggga 
5200
tgtgattttc tcaataaaat cgtctaatta tcttgatttt tgatgttgtt 
5250
gttgtacttt acgtgaatat ctcacaatta gtaagcagag tagaagattt 
5300
tgattagtat gacgacaaaa aatagtacaa ataaaattta catgaccttt 
5350
tttgtgttaa aaaaagttac atgatgttct gcaagaaaat atgcttgtat 
5400
aataaataat ttttattaat attttatttc tgactatttt cttcaataag 
5450
agaaaacata gtcattttgt aaaaggaaag aacgaaataa aaatgcaaat 
5500
tcttcacgtt ttgttaaata gatctaattt agttcttatt taagaactta 
5550
atattacatc tttaaaccaa agtaaaatat acaaatattg acaactatcg 
5600
gtctaattat ttcaataagc aaagattata gaataatttc gttaagtgta 
5650
tatatcgaag agaaaaaaac aaaggacaaa tcggtcaatt cactaatttg 
5700
atataaacgg taccaacaga tgacgaagcg cctctctata tatagagtac 
5750
cttctttccc aagaaacact atcatcttca tattttacat cttccgtttc 
5800
ttgtttctct cccttcatca atcatcatca gcattttcct taaatcttct 
5850
tcttctaaga gatcttagtt tcactgaaga acgaagATGA TGAAGTCAAG 
5900
ACGTGAACAA TCAATCGAAG AAGCAATCGT CGCAAATTAT TTGAAGATGA 
5950
TGATCGATAA CGTAAACGTT TGGCCTCGCC ACTTCCTCCG AAGCGAAGAC 
6000
GTGTACTGCA AGAATCCGTG GACGCTTTTC GTTACTAGAG ATCCTATAAT 
6050
CCTACACTTC GGACGATACT TCTTCGTTAA TCGGAGTGTG AATTCAGGTT 
6100
TAACCGATGG ATGTGAATAC GGTTGTTGGA GAATCATCGG TCGTGATAGA 
6150
GTGATCAAGT CGGTGACGAC CGGGAAGATT CTAGGGTTAA AGAAGGTTTA 
6200
TAAGTTCTGT GAAACTGATC GGAAACCGAA ATCGGTTTTT AAGTTCTTGG 
6250
AAAAG
6300