fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G60700 SMAD/FHA domain-containing protein (.1)

>AT1G60700.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, HpaI, KpnI, NdeI, NheI, NotI, PacI, PstI, PvuII, SacI, SalI, SmaI, SpeI, XbaI, XhoI
Name Recognition sequence Cut positions
EcoRV GAT|ATC 1320
HindIII A|AGCTT 711
NcoI C|CATGG 844
StyI C|C[AT][AT]GG 844, 1380


Click here to view TAIR data

>AT1G60700.1 length:1578
ATGGAAGAAG GTCTTCGAGT ATCTGAGCAT CTCTTCGTCA ATAAGGATCT 
50
CTTCGGTGGT GATGTCAAAA TTTCTGGTGA AGAAGATACA TCAGAGAGTT 
100
CCAATGTCAA AAGGAAAGTT GAAAGTCTAT TCTCTGTCAT GAGAAAGAGA 
150
ACATGTAGGC ACAAGTCTGT TGATGATGAT ATGTTTCCGG ATTTAGATAA 
200
TAATGCAGAT ATTGGTGATG GTGATGAGGA TATACGAAAT TGTCTGAGAC 
250
CTGAAAGTGA TTTCTGGTTT AAAAATCTTA TGGATAATCC TTATGATCCT 
300
CTGGATGAGG GTTCAATTGT AGACGCAAGT GGCAGTGACA CAGACATATC 
350
TGAATCTTCA GAGTTTGATG TTATATCAGA GCATGTTCCT GAAGACAATG 
400
ATTTGATAAC CGGATCGAAA TCTTTGTCTA TATGGTCCAG TGAGGATGAT 
450
GGAACTCTGG TTAGTAAGTG GTCTTCAGAA ACTCATAACG AGAAGAATGA 
500
TGTAAGGTCT AAAGAAGATT CAGGTGTCCC AAGCAATTCT GATATTTTCA 
550
AGAATGATGG CGACAAATCA TCTGCAATTG AAGTTAGATG TGGAGATGAA 
600
ATCAACATGC AGGGGTCTAT GGAGATAATG TGCATCAATG ATGATCATAG 
650
ACTGTGGAAT AAAGACGATG AACCAATACC GATCAGCATT GTTCCTCCTA 
700
ATGGCTGCGA AAGCTTATTG CTAGAAACGT GTTCACGTCA TCAGATCGAC 
750
AGATGTATAA ATGAATACAA CGTTCATGAG GATAATATTG GTCTTGAAAT 
800
CTCTCCAATA CCTTTAACAA AAACTCTTGA AAGACCTAGA AGGCCATGGT 
850
CAGTTTGTTG CTCTATAGCT GCACTCAGAA ACTTACCTCT AATGGAAGAT 
900
AGCTCAGGTG CTTGTACTTC TTTGGATGAA CAATTATATG CAAATGCTAC 
950
TACCTCTGAG GATAGGGACG CAGAACTTTC TCAACCCCCA TCAACTCTAT 
1000
ATCAGGAAGA AGTGGATGGT GAAGAAGAGA TTGACATTGA TGCAATGATC 
1050
CGCAAATTGA ATCTAGTCCC AGATGATTCA GATTCATGCT TCAACAGGGA 
1100
AGAATGGAAC ATGTCTAAGC ACCCAAGACA TGCATTAATT GGATTGGAAC 
1150
AATGCACAAG AACTTCAATG CAAAGAGCAA TTATGTTTCA TGGGGCAATT 
1200
GCCGTCCTGC ATTGTCCTGA TTCAAAGCAT TTTGTCAGAA AACGCGAGGT 
1250
AATTATTGGG AGATCATCTG GTGGCCTGAA TGTTGACATT GACTTGGGTA 
1300
AATATAATTA TGGGAGCAAG ATATCTCGGC GTCAGGCATT GGTTAAGCTA 
1350
GAGAACTACG GATCATTCTC TCTAAAGAAC CTTGGAAAGC AACATATCCT 
1400
TGTAAATGGC GGAAAACTCG ATAGAGGCCA GATTGTAACC CTCACATCGT 
1450
GTAGTTCAAT CAATATTAGA GGAATAACCT TTGTGTTCAA GATTAACAAA 
1500
GAAGCAGTGG GACAATTCTT GAAGAACAAC ACACGGAGGA AGAGCGAGGA 
1550
CGACAATAAA TTCAGATGGT GTGAATAG
1600

>AT1G60700.1 longest ORF length:525
MEEGLRVSEH LFVNKDLFGG DVKISGEEDT SESSNVKRKV ESLFSVMRKR 
50
TCRHKSVDDD MFPDLDNNAD IGDGDEDIRN CLRPESDFWF KNLMDNPYDP 
100
LDEGSIVDAS GSDTDISESS EFDVISEHVP EDNDLITGSK SLSIWSSEDD 
150
GTLVSKWSSE THNEKNDVRS KEDSGVPSNS DIFKNDGDKS SAIEVRCGDE 
200
INMQGSMEIM CINDDHRLWN KDDEPIPISI VPPNGCESLL LETCSRHQID 
250
RCINEYNVHE DNIGLEISPI PLTKTLERPR RPWSVCCSIA ALRNLPLMED 
300
SSGACTSLDE QLYANATTSE DRDAELSQPP STLYQEEVDG EEEIDIDAMI 
350
RKLNLVPDDS DSCFNREEWN MSKHPRHALI GLEQCTRTSM QRAIMFHGAI 
400
AVLHCPDSKH FVRKREVIIG RSSGGLNVDI DLGKYNYGSK ISRRQALVKL 
450
ENYGSFSLKN LGKQHILVNG GKLDRGQIVT LTSCSSINIR GITFVFKINK 
500
EAVGQFLKNN TRRKSEDDNK FRWCE
550