fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G61110 ANAC025 NAC domain containing protein 25 (.1)

>AT1G61110.1 CDS map

>>Show genomic map




Uncut enzymes: Acc65I, AccI, AccII(FnuDII), AccIII(BspMII), AflII, AflIII, AgeI, AhdI, AlwI, ApaI, ApaLI, ApoI, AscI, AseI, AvaII, AvrII, BaeI, BalI, BamHI, BanI, BanII, BbsI, BbvCI, BbvI, BcgI, BciVI, BglI, BglII, BmrI, BpmI, BsaBI, BsaI, BsaXI, BseRI, BsgI, BsiEI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BspDI, BspEI, BspHI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrFI, BsrGI, BssHII, BssSI, BstAPI, BstBI, BstF5I, BstNI, BstUI, BstXI, BstZ17I, BtgI, BtrI, BtsI, Cfr10I, ClaI, DraI, DraIII, EaeI, EagI, EarI, EciI, EcoO109I, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HgaI, HincII, HindIII, HpaI, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MscI, MspA1I, MwoI, N.BstNBI, NaeI, , NarI, NcoI, NdeI, NgoMIV, NheI, NotI, NruI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspGI, PspOMI, PstI, PvuI, PvuII, RsrII, SacI, SacII, SalI, SapI, SbfI, SexAI, SfaNI, SfcI, SfiI, SfoI, SgrAI, SnaBI, SspI, SwaI, TliI, XbaI, XcmI, XhoI, XmnI
Name Recognition sequence Cut positions
AatII GACGT|C 900
AciI C|CGC 38, 455
AclI AA|CGTT 707
AfeI AGC|GCT 354
AluI AG|CT 177, 910, 942
AlwNI CAGNNN|CTG 116
Aor51HI(Eco47III) AGC|GCT 354
AvaI C|PyCGPuG 52, 230
BclI T|GATCA 915
BfaI C|TAG 83, 494, 632, 908
BlpI GC|TNAGC 452
BsaAI PyAC|GTPu 321
BsaHI GPu|CGPyC 900
BsaJI C|CNNGG 52, 172, 229
BsaWI [AT]|CCGG[AT] 280
BsiHKAI G[AT]GC[AT]|C 205
BslI CCNNNNN|NNGG 58, 286, 384, 475
BsoBI C|PyCGPuG 52, 230
Bsp1286I G[GAT]GC[CAT]|C 205
BsrI ACTGGN| 959
BssKI |CCNGG 30, 51, 266
BstEII G|GTNACC 434
BstYI Pu|GATCPy 518, 576, 766
Bsu36I CC|TNAGG 747
Cac8I GCN|NGC 590
DdeI C|TNAG 438, 451, 567, 746, 846, 859
DpnI GA-CH3|TC 152, 167, 233, 403, 517, 575, 750, 765, 803, 914
DpnII |GATC 152, 167, 233, 403, 517, 575, 750, 765, 803, 914
DrdI GACNNNN|NNGTC 688
EcoNI CCTNN|NNNAGG 384
Fnu4HI GC|NGC 270, 447, 455
HaeII PuGCGC|Py 354
HaeIII GG|CC 27, 32, 258, 734, 742
HhaI GCG|C 353
HinP1I G|CGC 353
HinfI G|ANTC 15, 114, 854
HpaII C|CGG 29, 51, 265, 279
Hpy188I TCN|GA 236, 699, 763, 860
Hpy99I CG[AT]CG| 680, 898
HpyCH4III ACN|GT 367, 682
HpyCH4IV A|CGT 320, 706, 899
HpyCH4V TG|CA 323, 408, 877
MboI |GATC 152, 167, 233, 403, 517, 575, 750, 765, 803, 914
MseI T|TAA 464, 926
MslI CAPyNN|NNPuTG 800, 881
MspI C|CGG 29, 51, 265, 279
NciI CC|[CG]GG 30, 51, 266
NlaIII CATG| 7, 406, 410, 589, 875, 917, 952
NlaIV GGN|NCC 301
NsiI ATGCA|T 409
NspI PuCATG|Py 590
PflFI GACN|NNGTC 903
RsaI GT|AC 214, 629
Sau3AI |GATC 152, 167, 233, 403, 517, 575, 750, 765, 803, 914
Sau96I G|GNCC 27, 32, 734
ScaI AGT|ACT 630
ScrFI CC|NGG 30, 51, 266
SmaI CCC|GGG 52
SmlI C|TPyPuAG 100
SpeI A|CTAGT 84
SphI GCATG|C 590
StuI AGG|CCT 743
StyI C|C[AT][AT]GG 172
Taqƒ¿I T|CGA 17, 678, 776, 839
TfiI G|A[AT]TC 15, 114, 854
TseI G|C[AT]GC 270
Tsp45I |GT[CG]AC 331
Tsp509I |AATT 611
TspRI NNCA[CG]TGNN| 427, 445
Tth111I GACN|NNGTC 903
XmaI C|CCGGG 52


Click here to view TAIR data

>AT1G61110.1 length:972
ATGGAAAACA TGGGGGATTC GAGCATAGGG CCGGGCCATC CGCATCTCCC 
50
TCCCGGGTTT CGGTTTCACC CGACTGATGA GGAACTAGTA GTTCATTACC 
100
TCAAGAAGAA AGCAGATTCT GTTCCACTTC CAGTCTCAAT CATCGCAGAG 
150
ATTGATCTTT ACAAGTTTGA TCCTTGGGAG CTTCCAAGCA AGGCGAGTTT 
200
TGGAGAGCAC GAGTGGTACT TCTTTAGTCC TCGGGATCGG AAGTATCCAA 
250
ATGGGGTTAG GCCAAACCGG GCAGCAACTT CCGGTTATTG GAAAGCAACG 
300
GGAACCGATA AACCGATATT TACGTGCAAT AGTCACAAGG TTGGTGTCAA 
350
GAAAGCGCTT GTTTTTTACG GTGGAAAGCC TCCTAAAGGG ATAAAAACAG 
400
ATTGGATCAT GCATGAATAT CGCCTCACTG ATGGTAACCT TAGCACTGCG 
450
GCTAAGCCGC CTGACTTAAC CACGACAAGG AAAAACTCAC TACGGCTAGA 
500
CGATTGGGTT CTATGTAGGA TCTATAAGAA GAATAGTTCA CAAAGACCAA 
550
CAATGGAGAG AGTATTACTT AGAGAGGATC TAATGGAAGG CATGCTCTCA 
600
AAATCATCTG CTAATTCTTC TTCTACATCA GTACTAGACA ACAACGACAA 
650
CAATAATAAC AATAACGAAG AACACTTTTT CGACGGTATG GTCGTTTCTT 
700
CAGACAAACG TTCCTTGTGT GGTCAATACC GAATGGGCCA CGAGGCCTCA 
750
GGATCATCTT CATTCGGATC TTTCTTATCG AGCAAGAGGT TTCATCATAC 
800
AGGTGATCTC AACAATGATA ACTACAATGT CTCTTTTGTT TCGATGCTTA 
850
GTGAGATTCC TCAGAGTTCG GGGTTTCATG CAAATGGTGT TATGGATACG 
900
ACGTCGTCTC TAGCTGATCA TGGGGTTTTA AGACAGGCGT TTCAGCTTCC 
950
TAACATGAAC TGGCACTCAT AA
1000

>AT1G61110.1 longest ORF length:323
MENMGDSSIG PGHPHLPPGF RFHPTDEELV VHYLKKKADS VPLPVSIIAE 
50
IDLYKFDPWE LPSKASFGEH EWYFFSPRDR KYPNGVRPNR AATSGYWKAT 
100
GTDKPIFTCN SHKVGVKKAL VFYGGKPPKG IKTDWIMHEY RLTDGNLSTA 
150
AKPPDLTTTR KNSLRLDDWV LCRIYKKNSS QRPTMERVLL REDLMEGMLS 
200
KSSANSSSTS VLDNNDNNNN NNEEHFFDGM VVSSDKRSLC GQYRMGHEAS 
250
GSSSFGSFLS SKRFHHTGDL NNDNYNVSFV SMLSEIPQSS GFHANGVMDT 
300
TSSLADHGVL RQAFQLPNMN WHS
350