Locus |
Common name |
Short description |
AT1G62990 |
IXR11, KNAT7 |
KNOTTED-like homeobox of Arabidopsis thaliana 7 (.1) |
>AT1G62990.1 CDS map
>>Show genomic map

Uncut enzymes: AatII, Acc65I, AccI, AccIII(BspMII), AclI, AfeI, AflII, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, ApoI, AscI, AseI, AvaI, AvrII, BaeI, BalI, BamHI, BanI, BbsI, BbvCI, BbvI, BcgI, BciVI, BclI, BglI, BglII, BmrI, BpmI, BsaBI, BsaHI, BsaI, BsaWI, BsaXI, BseRI, BsgI, BsiWI, BslI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, BspDI, BspEI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrFI, BsrGI, BsrI, BssHII, BssSI, BstAPI, BstBI, BstEII, BstXI, BstZ17I, Bsu36I, BtrI, BtsI, Cfr10I, ClaI, DraIII, EarI, EciI, EcoNI, EcoO109I, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HaeII, HgaI, HincII, HindIII, HpaI, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MluI, MlyI, MnlI, MscI, MslI, NaeI, , NarI, NciI, NcoI, NdeI, NgoMIV, NheI, NotI, NruI, NsiI, NspI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflMI, PleI, PmeI, PpuMI, PshAI, PsiI, PspOMI, PstI, PvuI, RsaI, RsrII, SalI, SapI, SbfI, ScaI, SexAI, SfaNI, SfcI, SfiI, SfoI, SgrAI, SmaI, SmlI, SnaBI, SpeI, SphI, SspI, StuI, StyI, SwaI, TliI, TspRI, XbaI, XcmI, XhoI, XmaI, XmnI
Name |
Recognition sequence |
Cut positions |
AccII(FnuDII)
| CG|CG |
55 |
AciI
| C|CGC |
54, 129 |
AflIII
| A|CPuPyGT |
135 |
AluI
| AG|CT |
154, 187, 192, 264, 305, 318, 352 |
AvaII
| G|G[AT]CC |
525 |
BanII
| GPuGCPy|C |
265 |
BfaI
| C|TAG |
14, 587 |
BlpI
| GC|TNAGC |
191 |
BsaAI
| PyAC|GTPu |
136, 331 |
BsaJI
| C|CNNGG |
56, 233 |
BsiEI
| CGPuPy|CG |
59, 236 |
BsiHKAI
| G[AT]GC[AT]|C |
265 |
Bsp1286I
| G[GAT]GC[CAT]|C |
265 |
BspHI
| T|CATGA |
252 |
BssKI
| |CCNGG |
669 |
BstF5I
| GGATGNN| |
445 |
BstNI
| CC|[AT]GG |
669 |
BstUI
| CG|CG |
55 |
BstYI
| Pu|GATCPy |
553 |
BtgI
| C|CPuPyGG |
56, 233 |
Cac8I
| GCN|NGC |
364 |
DdeI
| C|TNAG |
190 |
DpnI
| GA-CH3|TC |
167, 178, 254, 452, 552 |
DpnII
| |GATC |
167, 178, 254, 452, 552 |
DraI
| TTT|AAA |
607 |
DrdI
| GACNNNN|NNGTC |
58 |
EaeI
| Py|GGCCPu |
236, 504 |
EagI
| C|GGCCG |
236 |
Fnu4HI
| GC|NGC |
9, 129, 320, 499 |
HaeIII
| GG|CC |
235, 503, 720 |
HhaI
| GCG|C |
862 |
HinP1I
| G|CGC |
862 |
HinfI
| G|ANTC |
543, 568, 616 |
HpaII
| C|CGG |
483 |
Hpy188I
| TCN|GA |
107, 176, 438, 458, 474, 546, 571 |
Hpy99I
| CG[AT]CG| |
347 |
HpyCH4III
| ACN|GT |
33, 80, 684 |
HpyCH4IV
| A|CGT |
135, 330 |
HpyCH4V
| TG|CA |
0, 321, 713, 771 |
MboI
| |GATC |
167, 178, 254, 452, 552 |
MfeI
| C|AATTG |
792 |
MseI
| T|TAA |
146, 606, 801 |
MspA1I
| C[AC]G|C[GT]G |
56, 319 |
MspI
| C|CGG |
483 |
MwoI
| GCNNNNN|NNGC |
63, 138, 234, 326, 351, 779 |
N.BstNBI
| GAGTCNNNN|N |
573 |
NlaIII
| CATG| |
251, 341 |
NlaIV
| GGN|NCC |
28 |
PflFI
| GACN|NNGTC |
435 |
PmlI
| CAC|GTG |
136, 331 |
PspGI
| |CC[AT]GG |
669 |
PvuII
| CAG|CTG |
319 |
SacI
| GAGCT|C |
265 |
SacII
| CCGC|GG |
56 |
Sau3AI
| |GATC |
167, 178, 254, 452, 552 |
Sau96I
| G|GNCC |
525 |
ScrFI
| CC|NGG |
669 |
Taqƒ¿I
| T|CGA |
267, 348, 611, 618 |
TfiI
| G|A[AT]TC |
543, 616 |
TseI
| G|C[AT]GC |
320 |
Tsp45I
| |GT[CG]AC |
259 |
Tsp509I
| |AATT |
120, 272, 373, 479, 663, 695, 750, 791, 818 |
Tth111I
| GACN|NNGTC |
435 |
Click here to view TAIR data
>AT1G62990.1 length:876
ATGCAAGAAG CGGCACTAGG TATGATGGGA GCCACCGTAG GCGGAGACGG | 50 |
AGACACCGCG GTCGTGGCGG AGCAGAATAG ACAGTTGAAA GGTGAGATAG | 100 |
CGACACATCC GATGTATGAG CAATTATTAG CCGCACACGT GGCGTGTTTA | 150 |
AGAGTAGCTA CTCCAATAGA TCAACTTCCG ATCATTGAAG CTCAGCTTTC | 200 |
TCAATCTCAT CATCTTCTCC GTTCTTACGC TTCCACGGCC GTTGGATACC | 250 |
ATCATGATCG TCACGAGCTC GATAATTTCT TGGCACAATA TGTAATGGTG | 300 |
TTGTGTAGCT TCAAAGAACA GCTGCAACAG CACGTGAGGG TTCATGCCGT | 350 |
CGAAGCTGTT ATGGCTTGCC GTGAAATTGA GAACAACCTT CATTCTCTTA | 400 |
CAGGAGCAAC TTTAGGAGAA GGGTCGGGTG CGACTATGTC GGAGGATGAG | 450 |
GATGATCTTC CGATGGATTT CTCGTCAGAT AATTCCGGCG TTGATTTTAG | 500 |
CGGCGGCCAC GATATGACGG GATTTGGTCC GTTGCTACCG ACTGAATCGG | 550 |
AAAGATCCCT TATGGAAAGA GTCAGACAAG AACTCAAACT AGAACTCAAA | 600 |
CAGGGTTTTA AATCGAGAAT CGAAGATGTA AGAGAAGAGA TAATGAGGAA | 650 |
GAGAAGGGCT GGGAAATTGC CAGGAGACAC AACTACTGTC TTGAAAAATT | 700 |
GGTGGCAACA ACATTGCAAA TGGCCTTACC CTACGGAAGA TGACAAGGCA | 750 |
AAATTGGTGG AGGAGACAGG ATTGCAGTTG AAGCAAATCA ACAATTGGTT | 800 |
CATTAACCAA CGCAAGAGGA ATTGGCACAA CAACTCTCAC TCCCTCACTT | 850 |
CCTTGAAGTC CAAGCGCAAA CACTAA | 900 |
>AT1G62990.1 longest ORF length:291
MQEAALGMMG ATVGGDGDTA VVAEQNRQLK GEIATHPMYE QLLAAHVACL | 50 |
RVATPIDQLP IIEAQLSQSH HLLRSYASTA VGYHHDRHEL DNFLAQYVMV | 100 |
LCSFKEQLQQ HVRVHAVEAV MACREIENNL HSLTGATLGE GSGATMSEDE | 150 |
DDLPMDFSSD NSGVDFSGGH DMTGFGPLLP TESERSLMER VRQELKLELK | 200 |
QGFKSRIEDV REEIMRKRRA GKLPGDTTTV LKNWWQQHCK WPYPTEDDKA | 250 |
KLVEETGLQL KQINNWFINQ RKRNWHNNSH SLTSLKSKRK H | 300 |
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