fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G62990 IXR11, KNAT7 KNOTTED-like homeobox of Arabidopsis thaliana 7 (.1)

>AT1G62990.1 CDS map

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Uncut enzymes: AatII, Acc65I, AccI, AccIII(BspMII), AclI, AfeI, AflII, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, ApoI, AscI, AseI, AvaI, AvrII, BaeI, BalI, BamHI, BanI, BbsI, BbvCI, BbvI, BcgI, BciVI, BclI, BglI, BglII, BmrI, BpmI, BsaBI, BsaHI, BsaI, BsaWI, BsaXI, BseRI, BsgI, BsiWI, BslI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, BspDI, BspEI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrFI, BsrGI, BsrI, BssHII, BssSI, BstAPI, BstBI, BstEII, BstXI, BstZ17I, Bsu36I, BtrI, BtsI, Cfr10I, ClaI, DraIII, EarI, EciI, EcoNI, EcoO109I, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HaeII, HgaI, HincII, HindIII, HpaI, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MluI, MlyI, MnlI, MscI, MslI, NaeI, , NarI, NciI, NcoI, NdeI, NgoMIV, NheI, NotI, NruI, NsiI, NspI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflMI, PleI, PmeI, PpuMI, PshAI, PsiI, PspOMI, PstI, PvuI, RsaI, RsrII, SalI, SapI, SbfI, ScaI, SexAI, SfaNI, SfcI, SfiI, SfoI, SgrAI, SmaI, SmlI, SnaBI, SpeI, SphI, SspI, StuI, StyI, SwaI, TliI, TspRI, XbaI, XcmI, XhoI, XmaI, XmnI
Name Recognition sequence Cut positions
AccII(FnuDII) CG|CG 55
AciI C|CGC 54, 129
AflIII A|CPuPyGT 135
AluI AG|CT 154, 187, 192, 264, 305, 318, 352
AvaII G|G[AT]CC 525
BanII GPuGCPy|C 265
BfaI C|TAG 14, 587
BlpI GC|TNAGC 191
BsaAI PyAC|GTPu 136, 331
BsaJI C|CNNGG 56, 233
BsiEI CGPuPy|CG 59, 236
BsiHKAI G[AT]GC[AT]|C 265
Bsp1286I G[GAT]GC[CAT]|C 265
BspHI T|CATGA 252
BssKI |CCNGG 669
BstF5I GGATGNN| 445
BstNI CC|[AT]GG 669
BstUI CG|CG 55
BstYI Pu|GATCPy 553
BtgI C|CPuPyGG 56, 233
Cac8I GCN|NGC 364
DdeI C|TNAG 190
DpnI GA-CH3|TC 167, 178, 254, 452, 552
DpnII |GATC 167, 178, 254, 452, 552
DraI TTT|AAA 607
DrdI GACNNNN|NNGTC 58
EaeI Py|GGCCPu 236, 504
EagI C|GGCCG 236
Fnu4HI GC|NGC 9, 129, 320, 499
HaeIII GG|CC 235, 503, 720
HhaI GCG|C 862
HinP1I G|CGC 862
HinfI G|ANTC 543, 568, 616
HpaII C|CGG 483
Hpy188I TCN|GA 107, 176, 438, 458, 474, 546, 571
Hpy99I CG[AT]CG| 347
HpyCH4III ACN|GT 33, 80, 684
HpyCH4IV A|CGT 135, 330
HpyCH4V TG|CA 0, 321, 713, 771
MboI |GATC 167, 178, 254, 452, 552
MfeI C|AATTG 792
MseI T|TAA 146, 606, 801
MspA1I C[AC]G|C[GT]G 56, 319
MspI C|CGG 483
MwoI GCNNNNN|NNGC 63, 138, 234, 326, 351, 779
N.BstNBI GAGTCNNNN|N 573
NlaIII CATG| 251, 341
NlaIV GGN|NCC 28
PflFI GACN|NNGTC 435
PmlI CAC|GTG 136, 331
PspGI |CC[AT]GG 669
PvuII CAG|CTG 319
SacI GAGCT|C 265
SacII CCGC|GG 56
Sau3AI |GATC 167, 178, 254, 452, 552
Sau96I G|GNCC 525
ScrFI CC|NGG 669
Taqƒ¿I T|CGA 267, 348, 611, 618
TfiI G|A[AT]TC 543, 616
TseI G|C[AT]GC 320
Tsp45I |GT[CG]AC 259
Tsp509I |AATT 120, 272, 373, 479, 663, 695, 750, 791, 818
Tth111I GACN|NNGTC 435


Click here to view TAIR data

>AT1G62990.1 length:876
ATGCAAGAAG CGGCACTAGG TATGATGGGA GCCACCGTAG GCGGAGACGG 
50
AGACACCGCG GTCGTGGCGG AGCAGAATAG ACAGTTGAAA GGTGAGATAG 
100
CGACACATCC GATGTATGAG CAATTATTAG CCGCACACGT GGCGTGTTTA 
150
AGAGTAGCTA CTCCAATAGA TCAACTTCCG ATCATTGAAG CTCAGCTTTC 
200
TCAATCTCAT CATCTTCTCC GTTCTTACGC TTCCACGGCC GTTGGATACC 
250
ATCATGATCG TCACGAGCTC GATAATTTCT TGGCACAATA TGTAATGGTG 
300
TTGTGTAGCT TCAAAGAACA GCTGCAACAG CACGTGAGGG TTCATGCCGT 
350
CGAAGCTGTT ATGGCTTGCC GTGAAATTGA GAACAACCTT CATTCTCTTA 
400
CAGGAGCAAC TTTAGGAGAA GGGTCGGGTG CGACTATGTC GGAGGATGAG 
450
GATGATCTTC CGATGGATTT CTCGTCAGAT AATTCCGGCG TTGATTTTAG 
500
CGGCGGCCAC GATATGACGG GATTTGGTCC GTTGCTACCG ACTGAATCGG 
550
AAAGATCCCT TATGGAAAGA GTCAGACAAG AACTCAAACT AGAACTCAAA 
600
CAGGGTTTTA AATCGAGAAT CGAAGATGTA AGAGAAGAGA TAATGAGGAA 
650
GAGAAGGGCT GGGAAATTGC CAGGAGACAC AACTACTGTC TTGAAAAATT 
700
GGTGGCAACA ACATTGCAAA TGGCCTTACC CTACGGAAGA TGACAAGGCA 
750
AAATTGGTGG AGGAGACAGG ATTGCAGTTG AAGCAAATCA ACAATTGGTT 
800
CATTAACCAA CGCAAGAGGA ATTGGCACAA CAACTCTCAC TCCCTCACTT 
850
CCTTGAAGTC CAAGCGCAAA CACTAA
900

>AT1G62990.1 longest ORF length:291
MQEAALGMMG ATVGGDGDTA VVAEQNRQLK GEIATHPMYE QLLAAHVACL 
50
RVATPIDQLP IIEAQLSQSH HLLRSYASTA VGYHHDRHEL DNFLAQYVMV 
100
LCSFKEQLQQ HVRVHAVEAV MACREIENNL HSLTGATLGE GSGATMSEDE 
150
DDLPMDFSSD NSGVDFSGGH DMTGFGPLLP TESERSLMER VRQELKLELK 
200
QGFKSRIEDV REEIMRKRRA GKLPGDTTTV LKNWWQQHCK WPYPTEDDKA 
250
KLVEETGLQL KQINNWFINQ RKRNWHNNSH SLTSLKSKRK H
300