fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G63030 DDF2ADREB1E DWARF AND DELAYED FLOWERING 2, Integrase-type DNA-binding superfamily protein (.1.2)

>AT1G63030.1 CDS map

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Uncut enzymes: AatII, Acc65I, AccI, AclI, AfeI, AflII, AgeI, AhdI, AluI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AseI, AvaI, AvaII, AvrII, BaeI, BalI, BamHI, BanII, BbsI, BbvI, BcgI, BciVI, BclI, BfaI, BglI, BglII, BlpI, BmrI, BpmI, BsaBI, BsaHI, BsaI, BsaXI, BseRI, BsgI, BsiWI, BslI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, BspDI, BspHI, BspMI, BsrBI, BsrDI, BsrGI, BsrI, BssHII, BssKI, BssSI, BstAPI, BstBI, BstEII, BstNI, BstXI, BstZ17I, Bsu36I, BtsI, ClaI, DraI, DrdI, EarI, EciI, EcoNI, EcoO109I, EcoRI, FauI, FokI, FseI, FspI, HaeII, HgaI, HincII, HindIII, HpaI, HphI, HpyCH4V, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MscI, MseI, , NarI, NciI, NcoI, NdeI, NheI, NlaIII, NotI, NruI, NsiI, NspI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PflMI, PleI, PmeI, PpuMI, PshAI, PsiI, PspGI, PspOMI, PstI, PvuI, PvuII, RsrII, SacI, SacII, SalI, SapI, Sau96I, SbfI, ScaI, ScrFI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SmlI, SnaBI, SpeI, SphI, SspI, StuI, StyI, SwaI, TliI, Tth111I, XbaI, XcmI, XhoI, XmaI
Name Recognition sequence Cut positions
AccII(FnuDII) CG|CG 227, 238, 436
AccIII(BspMII) T|CCGGA 297
AciI C|CGC 192, 237, 344, 458
AflIII A|CPuPyGT 73, 398
ApoI Pu|AATTPy 249
BanI G|GPyPuCC 279
BbvCI CC|TCAGC 381
BsaAI PyAC|GTPu 197, 496
BsaJI C|CNNGG 20
BsaWI [AT]|CCGG[AT] 297
BsiEI CGPuPy|CG 320
BsiHKAI G[AT]GC[AT]|C 200
Bsp1286I G[GAT]GC[CAT]|C 200
BspEI T|CCGGA 297
BspT107I(HgiCI) G|G[TC][AG]CC 279
BsrFI Pu|CCGGPy 276, 282
BstF5I GGATGNN| 406
BstUI CG|CG 227, 238, 436
BstYI Pu|GATCPy 235
BtgI C|CPuPyGG 20
BtrI CAC|GTC 74, 399
Cac8I GCN|NGC 45, 95, 282, 435
Cfr10I [AG]|CCGG[TC] 276, 282
DdeI C|TNAG 380
DpnI GA-CH3|TC 234, 293, 304, 465
DpnII |GATC 234, 293, 304, 465
DraIII CACNNN|GTG 208
EaeI Py|GGCCPu 191, 320
EagI C|GGCCG 320
EcoRV GAT|ATC 13
Fnu4HI GC|NGC 98, 192, 318, 327, 344, 458
HaeIII GG|CC 190, 319, 342
HhaI GCG|C 226, 310
HinP1I G|CGC 226, 310
HinfI G|ANTC 143, 157, 258, 412
HpaII C|CGG 275, 281, 296, 347
Hpy188I TCN|GA 166, 176, 255, 402
Hpy99I CG[AT]CG| 8, 153, 178, 206, 400
HpyCH4III ACN|GT 18, 369
HpyCH4IV A|CGT 73, 196, 207, 398, 495
MboI |GATC 234, 293, 304, 465
MslI CAPyNN|NNPuTG 478
MspA1I C[AC]G|C[GT]G 329
MspI C|CGG 275, 281, 296, 347
MwoI GCNNNNN|NNGC 41, 189, 219, 324
N.BstNBI GAGTCNNNN|N 162, 417
NaeI GCC|GGC 282
NgoMIV G|CCGGC 282
NlaIV GGN|NCC 279, 444
PmlI CAC|GTG 197
RsaI GT|AC 357, 469, 493
Sau3AI |GATC 234, 293, 304, 465
SfcI C|TPuPyAG 87
TaqƒżI T|CGA 154
TfiI G|A[AT]TC 143, 258
TseI G|C[AT]GC 327
Tsp45I |GT[CG]AC 76, 527
Tsp509I |AATT 248, 364
TspRI NNCA[CG]TGNN| 292, 388
XmnI GAANN|NNTTC 143


Click here to view TAIR data

>AT1G63030.1 length:546
ATGGAAAACG ACGATATCAC CGTGGCGGAG ATGAAGCCAA AGAAGCGTGC 
50
TGGACGGAGG ATTTTCAAGG AGACACGTCA CCCAATCTAC AGAGGCGTGC 
100
GGCGTAGGGA CGGCGACAAA TGGGTATGCG AAGTCCGTGA ACCGATTCAT 
150
CAGCGTCGAG TCTGGCTCGG AACTTATCCG ACGGCAGATA TGGCCGCACG 
200
TGCTCACGAC GTGGCGGTTC TTGCTCTGCG CGGGAGATCC GCGTGTTTGA 
250
ATTTCTCCGA TTCTGCTTGG AGGTTGCCGG TGCCGGCATC CACTGATCCG 
300
GACACGATCA GGCGCACGGC GGCCGAAGCA GCGGAGATGT TCAGGCCGCC 
350
GGAGTTTAGT ACAGGAATTA CGGTTTTACC CTCAGCCAGT GAGTTTGACA 
400
CGTCGGATGA AGGAGTCGCT GGAATGATGA TGAGGCTCGC GGAGGAGCCG 
450
TTGATGTCGC CGCCAAGATC GTACATTGAT ATGAATACGA GTGTGTACGT 
500
GGACGAAGAA ATGTGTTACG AAGATTTGTC ACTTTGGAGT TACTAA
550

>AT1G63030.1 longest ORF length:181
MENDDITVAE MKPKKRAGRR IFKETRHPIY RGVRRRDGDK WVCEVREPIH 
50
QRRVWLGTYP TADMAARAHD VAVLALRGRS ACLNFSDSAW RLPVPASTDP 
100
DTIRRTAAEA AEMFRPPEFS TGITVLPSAS EFDTSDEGVA GMMMRLAEEP 
150
LMSPPRSYID MNTSVYVDEE MCYEDLSLWS Y
200