fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G63470 AT hook motif DNA-binding family protein (.1)

>AT1G63470.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BglII, EcoRI, EcoRV, HindIII, HpaI, KpnI, NdeI, NotI, PacI, SacI, SmaI, SpeI, XbaI, XhoI
Name Recognition sequence Cut positions
BamHI G|GATCC 751
NcoI C|CATGG 194
NheI G|CTAGC 169
PstI CTGCA|G 274, 995
PvuII CAG|CTG 277, 515
SalI G|TCGAC 452
StyI C|C[AT][AT]GG 194


Click here to view TAIR data

>AT1G63470.1 length:1137
ATGGATGGGA GAGAAGCTAT GGCATTTCCA GGCTCGCATT CTCAGTTCTA 
50
TCTTCAGAGA GGAGTTTTTA CCAATCTTAC ACCTTCCCAG GTCGCGAGTG 
100
GTCTTCACGC GCCGCCGCCA CCTCCGGGAA TGAGGCCAAT GTCAAACCCT 
150
AACATTCACC ACCCTCAGGC TAGCAATCCA GGACCTCCTT TCTCCATGGC 
200
TGAGCACAGG CATTCTGATT TCGGACACAG CATTCACATG GGGATGGCTT 
250
CTCCTGCTGC GGTGCAGCCT ACTCTGCAGC TGCCGCCTCC ACCGTCGGAG 
300
CAACCGATGG TTAAGAAGAA ACGTGGAAGG CCAAGAAAGT ATGTTCCTGA 
350
TGGACAAGTT TCATTGGGGC TTTCTCCAAT GCCTTGTGTT AGTAAAAAGT 
400
CTAAGGACTC TTCTTCAATG TCTGATCCTA ATGCACCTAA AAGAGCCAGA 
450
GGTCGACCTC CCGGAACTGG AAGGAAGCAA CGCTTGGCTA ATCTTGGTGA 
500
GTGGATGAAT ACATCAGCTG GACTTGCTTT TGCACCTCAT GTGATCAGTG 
550
TTGGATCAGG AGAAGATATT GTTTCGAAAG TTTTGTCTTT TTCACAAAAA 
600
AGACCTCGGG CTCTTTGTAT AATGTCAGGC ACTGGAACGG TTTCTTCAGT 
650
CACTCTGCGT GAACCCGCTT CAACAACGCC TTCCTTAACA TTTGAGGGAC 
700
GTTTTGAGAT TCTAAGTTTA GGTGGATCTT ATCTGGTGAA TGAAGAAGGT 
750
GGATCCAAAA GTCGAACAGG CGGTTTGAGT GTCTCTCTTT CTGGTCCTGA 
800
AGGTCATGTT ATCGGCGGTG GAATTGGAAT GCTTATCGCA GCCAGCCTCG 
850
TTCAGGTGGT GGCTTGTAGT TTCGTGTACG GAGCAAGTGC AAAGTCTAAT 
900
AATAACAATA ACAAGACCAT CAAACAAGAA ATAAAACCTA AGCAAGAGCC 
950
GACCAATAGC GAAATGGAGA CCACACCTGG TAGTGCACCA GAAGCTGCAG 
1000
CATCGACGGG TCAGCATACG CCACAGAACT TCCCAGCTCA GGGAATGAGC 
1050
GGATGGCCCG TTTCAGGCTC AGGCTCAGGC AGATCACTTG ACTCTAGCAG 
1100
AAACCCACTC ACTGATATTG ACTTGACTCG CGGGTGA
1150

>AT1G63470.1 longest ORF length:378
MDGREAMAFP GSHSQFYLQR GVFTNLTPSQ VASGLHAPPP PPGMRPMSNP 
50
NIHHPQASNP GPPFSMAEHR HSDFGHSIHM GMASPAAVQP TLQLPPPPSE 
100
QPMVKKKRGR PRKYVPDGQV SLGLSPMPCV SKKSKDSSSM SDPNAPKRAR 
150
GRPPGTGRKQ RLANLGEWMN TSAGLAFAPH VISVGSGEDI VSKVLSFSQK 
200
RPRALCIMSG TGTVSSVTLR EPASTTPSLT FEGRFEILSL GGSYLVNEEG 
250
GSKSRTGGLS VSLSGPEGHV IGGGIGMLIA ASLVQVVACS FVYGASAKSN 
300
NNNNKTIKQE IKPKQEPTNS EMETTPGSAP EAAASTGQHT PQNFPAQGMS 
350
GWPVSGSGSG RSLDSSRNPL TDIDLTRG
400