|
|
|
|
|
|
|
|
| Locus | Common name | Short description |
| AT1G64620 | AtDof1,8 | Dof-type zinc finger DNA-binding family protein (.1) |
>AT1G64620.1 CDS map
>>Show genomic map
Uncut enzymes: AatII, Acc65I, AccII(FnuDII), AccIII(BspMII), AclI, AfeI, AflII, AflIII, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, ApoI, AscI, AseI, AvaI, AvrII, BaeI, BalI, BanI, BanII, BbsI, BbvCI, BbvI, BcgI, BciVI, BglI, BlpI, BmrI, BpmI, BsaAI, BsaBI, BsaI, BsaXI, BseRI, BsgI, BsiEI, BsiHKAI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, Bsp1286I, BspDI, BspEI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrFI, BsrGI, BssHII, BssSI, BstAPI, BstBI, BstEII, BstF5I, BstUI, BstZ17I, BtgI, BtrI, BtsI, Cac8I, Cfr10I, ClaI, DraI, DraIII, DrdI, EaeI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HaeII, HgaI, HhaI, HinP1I, HincII, HindIII, HpaI, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MscI, MspA1I, N.BstNBI, NaeI, , NarI, NcoI, NdeI, NgoMIV, NheI, NotI, NruI, NsiI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspOMI, PvuI, PvuII, RsrII, SacI, SacII, SalI, SapI, SbfI, ScaI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SpeI, SphI, SspI, StuI, StyI, SwaI, TliI, Tth111I, XbaI, XcmI, XhoI, XmaI, XmnI
| Name | Recognition sequence | Cut positions |
| AccI | GT|[AC][TG]AC | 712 |
| AciI | C|CGC | 249, 292, 432 |
| AluI | AG|CT | 627, 769, 976 |
| AvaII | G|G[AT]CC | 247, 820 |
| BamHI | G|GATCC | 798 |
| BclI | T|GATCA | 948 |
| BfaI | C|TAG | 642 |
| BglII | A|GATCT | 307, 495 |
| BsaHI | GPu|CGPyC | 289 |
| BsaJI | C|CNNGG | 214 |
| BsaWI | [AT]|CCGG[AT] | 126 |
| BslI | CCNNNNN|NNGG | 282, 420, 774 |
| BspHI | T|CATGA | 699, 761, 951 |
| BsrI | ACTGGN| | 603 |
| BssKI | |CCNGG | 137, 214, 724 |
| BstNI | CC|[AT]GG | 137, 214 |
| BstXI | CCANNNNN|NTGG | 990 |
| BstYI | Pu|GATCPy | 307, 495, 638, 798 |
| Bsu36I | CC|TNAGG | 20, 265 |
| DdeI | C|TNAG | 19, 264, 415, 735 |
| DpnI | GA-CH3|TC | 49, 306, 494, 526, 637, 797, 947 |
| DpnII | |GATC | 49, 306, 494, 526, 637, 797, 947 |
| Fnu4HI | GC|NGC | 209, 286, 429, 580, 851, 1029 |
| HaeIII | GG|CC | 15, 843 |
| HinfI | G|ANTC | 83, 702, 778 |
| HpaII | C|CGG | 125, 723 |
| Hpy188I | TCN|GA | 734, 920 |
| Hpy99I | CG[AT]CG| | 278 |
| HpyCH4III | ACN|GT | 77, 148, 544, 746 |
| HpyCH4IV | A|CGT | 455, 805 |
| HpyCH4V | TG|CA | 158, 233, 564, 1033 |
| MboI | |GATC | 49, 306, 494, 526, 637, 797, 947 |
| MseI | T|TAA | 167, 408, 489, 1010 |
| MslI | CAPyNN|NNPuTG | 956 |
| MspI | C|CGG | 125, 723 |
| MwoI | GCNNNNN|NNGC | 292, 851, 1029 |
| NciI | CC|[CG]GG | 724 |
| NlaIII | CATG| | 63, 679, 698, 760, 950, 956, 1006, 1047 |
| NlaIV | GGN|NCC | 259, 798, 820 |
| NspI | PuCATG|Py | 64, 1007 |
| PspGI | |CC[AT]GG | 137, 214 |
| PstI | CTGCA|G | 234 |
| RsaI | GT|AC | 217, 572 |
| Sau3AI | |GATC | 49, 306, 494, 526, 637, 797, 947 |
| Sau96I | G|GNCC | 247, 820 |
| ScrFI | CC|NGG | 137, 214, 724 |
| SfcI | C|TPuPyAG | 198, 234 |
| SmlI | C|TPyPuAG | 464, 515 |
| Taqƒ¿I | T|CGA | 80 |
| TfiI | G|A[AT]TC | 83, 702, 778 |
| TseI | G|C[AT]GC | 209, 429, 580, 851, 1029 |
| Tsp45I | |GT[CG]AC | 54, 532 |
| Tsp509I | |AATT | 317 |
| TspRI | NNCA[CG]TGNN| | 7, 603, 826 |
Click here to view TAIR data
>AT1G64620.1 length:1059
ATGGACACTG CTAAATGGCC TCAGGAGTTT GTTGTGAAGC CAATGAACGA | 50 |
GATCGTGACA AACACATGCC TAAAACAACA GTCGAATCCT CCTTCTCCTG | 100 |
CTACTCCTGT GGAAAGGAAG GCAAGACCGG AGAAAGACCA GGCTTTGAAC | 150 |
TGTCCAAGAT GCAACTCCTT AAACACCAAG TTCTGTTACT ACAACAACTA | 200 |
CAGCCTGACG CAGCCCAGGT ACTTTTGTAA AGACTGCAGG AGGTATTGGA | 250 |
CCGCAGGTGG TTCCCTCAGG AACATCCCCG TCGGTGGCGG CGTCCGCAAG | 300 |
AACAAGAGAT CTTCTTCCAA TTCCTCTTCC TCTTCACCCT CTTCGTCTTC | 350 |
TTCTTCAAAG AAACCTCTTT TTGCCAACAA CAACACGCCT ACGCCTCCTC | 400 |
TTCCTCATCT TAACCCTAAG ATTGGTGAAG CAGCCGCTAC TAAAGTTCAA | 450 |
GACTTGACGT TTTCTCAAGG GTTTGGGAAC GCCCACGAGG TTAAAGATCT | 500 |
CAACTTGGCG TTTTCTCAAG GGTTTGGGAT CGGTCACAAT CATCACAGTA | 550 |
GTATCCCAGA GTTTCTGCAA GTAGTACCCA GCAGCAGTAT GAAGAACAAC | 600 |
CCACTGGTCT CAACTTCCTC GTCTTTGGAG CTTTTAGGGA TCTCTAGTTC | 650 |
CTCTGCTTCC TCTAACTCAC GCCCTGCTTT CATGTCTTAT CCAAATGTTC | 700 |
ATGATTCATC GGTCTACACA GCATCCGGGT TTGGTCTGAG TTACCCACAG | 750 |
TTTCAAGAGT TCATGAGACC AGCTTTGGGA TTCTCTCTTG ATGGTGGGGA | 800 |
TCCTCTACGT CAAGAAGAGG GGTCCAGTGG CACTAATAAT GGAAGGCCGT | 850 |
TGCTGCCATT TGAGAGCCTC CTCAAACTTC CAGTTTCATC ATCAAGCACC | 900 |
AATAGTGGTG GGAATGGCAA TCTGAAAGAG AATAATGATG AGCATAGTGA | 950 |
TCATGAACAT GAGAAAGAAG AAGGAGAAGC TGACCAATCT GTTGGGTTTT | 1000 |
GGAGTGGCAT GTTAAGTGCT GGTGCTTCTG CTGCTGCATC TGGTGGTTCA | 1050 |
TGGCAATAA | 1100 |
>AT1G64620.1 longest ORF length:352
MDTAKWPQEF VVKPMNEIVT NTCLKQQSNP PSPATPVERK ARPEKDQALN | 50 |
CPRCNSLNTK FCYYNNYSLT QPRYFCKDCR RYWTAGGSLR NIPVGGGVRK | 100 |
NKRSSSNSSS SSPSSSSSSK KPLFANNNTP TPPLPHLNPK IGEAAATKVQ | 150 |
DLTFSQGFGN AHEVKDLNLA FSQGFGIGHN HHSSIPEFLQ VVPSSSMKNN | 200 |
PLVSTSSSLE LLGISSSSAS SNSRPAFMSY PNVHDSSVYT ASGFGLSYPQ | 250 |
FQEFMRPALG FSLDGGDPLR QEEGSSGTNN GRPLLPFESL LKLPVSSSST | 300 |
NSGGNGNLKE NNDEHSDHEH EKEEGEADQS VGFWSGMLSA GASAAASGGS | 350 |
WQ | 400 |