fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G64620 AtDof1,8 Dof-type zinc finger DNA-binding family protein (.1)

>AT1G64620.1 CDS map

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Uncut enzymes: AatII, Acc65I, AccII(FnuDII), AccIII(BspMII), AclI, AfeI, AflII, AflIII, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, ApoI, AscI, AseI, AvaI, AvrII, BaeI, BalI, BanI, BanII, BbsI, BbvCI, BbvI, BcgI, BciVI, BglI, BlpI, BmrI, BpmI, BsaAI, BsaBI, BsaI, BsaXI, BseRI, BsgI, BsiEI, BsiHKAI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, Bsp1286I, BspDI, BspEI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrFI, BsrGI, BssHII, BssSI, BstAPI, BstBI, BstEII, BstF5I, BstUI, BstZ17I, BtgI, BtrI, BtsI, Cac8I, Cfr10I, ClaI, DraI, DraIII, DrdI, EaeI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HaeII, HgaI, HhaI, HinP1I, HincII, HindIII, HpaI, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MscI, MspA1I, N.BstNBI, NaeI, , NarI, NcoI, NdeI, NgoMIV, NheI, NotI, NruI, NsiI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspOMI, PvuI, PvuII, RsrII, SacI, SacII, SalI, SapI, SbfI, ScaI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SpeI, SphI, SspI, StuI, StyI, SwaI, TliI, Tth111I, XbaI, XcmI, XhoI, XmaI, XmnI
Name Recognition sequence Cut positions
AccI GT|[AC][TG]AC 712
AciI C|CGC 249, 292, 432
AluI AG|CT 627, 769, 976
AvaII G|G[AT]CC 247, 820
BamHI G|GATCC 798
BclI T|GATCA 948
BfaI C|TAG 642
BglII A|GATCT 307, 495
BsaHI GPu|CGPyC 289
BsaJI C|CNNGG 214
BsaWI [AT]|CCGG[AT] 126
BslI CCNNNNN|NNGG 282, 420, 774
BspHI T|CATGA 699, 761, 951
BsrI ACTGGN| 603
BssKI |CCNGG 137, 214, 724
BstNI CC|[AT]GG 137, 214
BstXI CCANNNNN|NTGG 990
BstYI Pu|GATCPy 307, 495, 638, 798
Bsu36I CC|TNAGG 20, 265
DdeI C|TNAG 19, 264, 415, 735
DpnI GA-CH3|TC 49, 306, 494, 526, 637, 797, 947
DpnII |GATC 49, 306, 494, 526, 637, 797, 947
Fnu4HI GC|NGC 209, 286, 429, 580, 851, 1029
HaeIII GG|CC 15, 843
HinfI G|ANTC 83, 702, 778
HpaII C|CGG 125, 723
Hpy188I TCN|GA 734, 920
Hpy99I CG[AT]CG| 278
HpyCH4III ACN|GT 77, 148, 544, 746
HpyCH4IV A|CGT 455, 805
HpyCH4V TG|CA 158, 233, 564, 1033
MboI |GATC 49, 306, 494, 526, 637, 797, 947
MseI T|TAA 167, 408, 489, 1010
MslI CAPyNN|NNPuTG 956
MspI C|CGG 125, 723
MwoI GCNNNNN|NNGC 292, 851, 1029
NciI CC|[CG]GG 724
NlaIII CATG| 63, 679, 698, 760, 950, 956, 1006, 1047
NlaIV GGN|NCC 259, 798, 820
NspI PuCATG|Py 64, 1007
PspGI |CC[AT]GG 137, 214
PstI CTGCA|G 234
RsaI GT|AC 217, 572
Sau3AI |GATC 49, 306, 494, 526, 637, 797, 947
Sau96I G|GNCC 247, 820
ScrFI CC|NGG 137, 214, 724
SfcI C|TPuPyAG 198, 234
SmlI C|TPyPuAG 464, 515
Taqƒ¿I T|CGA 80
TfiI G|A[AT]TC 83, 702, 778
TseI G|C[AT]GC 209, 429, 580, 851, 1029
Tsp45I |GT[CG]AC 54, 532
Tsp509I |AATT 317
TspRI NNCA[CG]TGNN| 7, 603, 826


Click here to view TAIR data

>AT1G64620.1 length:1059
ATGGACACTG CTAAATGGCC TCAGGAGTTT GTTGTGAAGC CAATGAACGA 
50
GATCGTGACA AACACATGCC TAAAACAACA GTCGAATCCT CCTTCTCCTG 
100
CTACTCCTGT GGAAAGGAAG GCAAGACCGG AGAAAGACCA GGCTTTGAAC 
150
TGTCCAAGAT GCAACTCCTT AAACACCAAG TTCTGTTACT ACAACAACTA 
200
CAGCCTGACG CAGCCCAGGT ACTTTTGTAA AGACTGCAGG AGGTATTGGA 
250
CCGCAGGTGG TTCCCTCAGG AACATCCCCG TCGGTGGCGG CGTCCGCAAG 
300
AACAAGAGAT CTTCTTCCAA TTCCTCTTCC TCTTCACCCT CTTCGTCTTC 
350
TTCTTCAAAG AAACCTCTTT TTGCCAACAA CAACACGCCT ACGCCTCCTC 
400
TTCCTCATCT TAACCCTAAG ATTGGTGAAG CAGCCGCTAC TAAAGTTCAA 
450
GACTTGACGT TTTCTCAAGG GTTTGGGAAC GCCCACGAGG TTAAAGATCT 
500
CAACTTGGCG TTTTCTCAAG GGTTTGGGAT CGGTCACAAT CATCACAGTA 
550
GTATCCCAGA GTTTCTGCAA GTAGTACCCA GCAGCAGTAT GAAGAACAAC 
600
CCACTGGTCT CAACTTCCTC GTCTTTGGAG CTTTTAGGGA TCTCTAGTTC 
650
CTCTGCTTCC TCTAACTCAC GCCCTGCTTT CATGTCTTAT CCAAATGTTC 
700
ATGATTCATC GGTCTACACA GCATCCGGGT TTGGTCTGAG TTACCCACAG 
750
TTTCAAGAGT TCATGAGACC AGCTTTGGGA TTCTCTCTTG ATGGTGGGGA 
800
TCCTCTACGT CAAGAAGAGG GGTCCAGTGG CACTAATAAT GGAAGGCCGT 
850
TGCTGCCATT TGAGAGCCTC CTCAAACTTC CAGTTTCATC ATCAAGCACC 
900
AATAGTGGTG GGAATGGCAA TCTGAAAGAG AATAATGATG AGCATAGTGA 
950
TCATGAACAT GAGAAAGAAG AAGGAGAAGC TGACCAATCT GTTGGGTTTT 
1000
GGAGTGGCAT GTTAAGTGCT GGTGCTTCTG CTGCTGCATC TGGTGGTTCA 
1050
TGGCAATAA
1100

>AT1G64620.1 longest ORF length:352
MDTAKWPQEF VVKPMNEIVT NTCLKQQSNP PSPATPVERK ARPEKDQALN 
50
CPRCNSLNTK FCYYNNYSLT QPRYFCKDCR RYWTAGGSLR NIPVGGGVRK 
100
NKRSSSNSSS SSPSSSSSSK KPLFANNNTP TPPLPHLNPK IGEAAATKVQ 
150
DLTFSQGFGN AHEVKDLNLA FSQGFGIGHN HHSSIPEFLQ VVPSSSMKNN 
200
PLVSTSSSLE LLGISSSSAS SNSRPAFMSY PNVHDSSVYT ASGFGLSYPQ 
250
FQEFMRPALG FSLDGGDPLR QEEGSSGTNN GRPLLPFESL LKLPVSSSST 
300
NSGGNGNLKE NNDEHSDHEH EKEEGEADQS VGFWSGMLSA GASAAASGGS 
350
WQ
400