Locus |
Common name |
Short description |
AT1G65330 |
AGL37, PHE1 |
PHERES1, AGAMOUS-like 37, MADS-box transcription factor family protein (.1) |
>AT1G65330.1 CDS map
>>Show genomic map
![](/fiore/public_db/temp/temp23265918191101167.png)
Uncut enzymes: AatII, Acc65I, AccI, AccII(FnuDII), AccIII(BspMII), AciI, AclI, AfeI, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AseI, AvaI, AvrII, BaeI, BamHI, BanI, BanII, BbsI, BbvCI, BbvI, BcgI, BciVI, BglI, BlpI, BmrI, BpmI, BsaHI, BsaI, BsaXI, BseRI, BsgI, BsiEI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, BspEI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrGI, BsrI, BssHII, BssSI, BstBI, BstEII, BstUI, BstZ17I, Bsu36I, BtgI, BtrI, BtsI, Cac8I, DraI, DraIII, DrdI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRI, EcoRV, FauI, Fnu4HI, FokI, FseI, FspI, HaeII, HgaI, HhaI, HinP1I, HindIII, HpaI, HphI, Hpy99I, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MspA1I, NaeI, , NarI, NciI, NcoI, NdeI, NgoMIV, NheI, NotI, NruI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspOMI, PstI, PvuI, PvuII, RsrII, SacI, SacII, SalI, SapI, SbfI, ScaI, SexAI, SfaNI, SfcI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SpeI, SphI, SspI, StuI, SwaI, TliI, TseI, Tth111I, XbaI, XhoI, XmaI
Name |
Recognition sequence |
Cut positions |
AflII
| C|TTAAG |
463 |
AflIII
| A|CPuPyGT |
374 |
AluI
| AG|CT |
96, 303, 511 |
ApoI
| Pu|AATTPy |
88, 699 |
AvaII
| G|G[AT]CC |
227, 232 |
BalI
| TGG|CCA |
169 |
BclI
| T|GATCA |
633 |
BfaI
| C|TAG |
98, 835 |
BglII
| A|GATCT |
396 |
BsaAI
| PyAC|GTPu |
308 |
BsaBI
| GATNN|NNATC |
686 |
BsaJI
| C|CNNGG |
166 |
BsaWI
| [AT]|CCGG[AT] |
230 |
BsiHKAI
| G[AT]GC[AT]|C |
812 |
BslI
| CCNNNNN|NNGG |
504, 611 |
Bsp1286I
| G[GAT]GC[CAT]|C |
812 |
BspDI
| AT|CGAT |
769 |
BspHI
| T|CATGA |
654 |
BsrFI
| Pu|CCGGPy |
594 |
BssKI
| |CCNGG |
158, 611 |
BstAPI
| GCANNNN|NTGC |
736 |
BstF5I
| GGATGNN| |
78, 529 |
BstNI
| CC|[AT]GG |
158, 611 |
BstXI
| CCANNNNN|NTGG |
242 |
BstYI
| Pu|GATCPy |
396, 458, 681, 705 |
Cfr10I
| [AG]|CCGG[TC] |
594 |
ClaI
| AT|CGAT |
769 |
DdeI
| C|TNAG |
328 |
DpnI
| GA-CH3|TC |
154, 248, 274, 395, 457, 569, 632, 680, 704, 830 |
DpnII
| |GATC |
154, 248, 274, 395, 457, 569, 632, 680, 704, 830 |
EaeI
| Py|GGCCPu |
169 |
HaeIII
| GG|CC |
168 |
HincII
| GTPy|PuAC |
118 |
HinfI
| G|ANTC |
36, 332, 477, 563, 638 |
HpaII
| C|CGG |
229, 593 |
Hpy188I
| TCN|GA |
329, 635, 689 |
HpyCH4III
| ACN|GT |
319, 472, 519, 783 |
HpyCH4IV
| A|CGT |
257, 265, 292, 307, 372 |
HpyCH4V
| TG|CA |
529, 737 |
MboI
| |GATC |
154, 248, 274, 395, 457, 569, 632, 680, 704, 830 |
MscI
| TGG|CCA |
169 |
MseI
| T|TAA |
341, 420, 462, 660, 708 |
MslI
| CAPyNN|NNPuTG |
386, 670 |
MspI
| C|CGG |
229, 593 |
MwoI
| GCNNNNN|NNGC |
736 |
N.BstNBI
| GAGTCNNNN|N |
482 |
NlaIII
| CATG| |
123, 386, 653, 664, 739 |
NlaIV
| GGN|NCC |
162 |
NsiI
| ATGCA|T |
530 |
NspI
| PuCATG|Py |
124 |
PspGI
| |CC[AT]GG |
158, 611 |
RsaI
| GT|AC |
145, 491 |
Sau3AI
| |GATC |
154, 248, 274, 395, 457, 569, 632, 680, 704, 830 |
Sau96I
| G|GNCC |
227, 232 |
ScrFI
| CC|NGG |
158, 611 |
SmlI
| C|TPyPuAG |
463 |
StyI
| C|C[AT][AT]GG |
166 |
Taqƒ¿I
| T|CGA |
152, 200, 334, 768 |
TfiI
| G|A[AT]TC |
36, 332, 563, 638 |
Tsp45I
| |GT[CG]AC |
786 |
Tsp509I
| |AATT |
87, 323, 600, 698 |
TspRI
| NNCA[CG]TGNN| |
42, 793, 802 |
XcmI
| CCANNNNN|NNNNTGG |
245 |
XmnI
| GAANN|NNTTC |
88 |
Click here to view TAIR data
>AT1G65330.1 length:840
ATGAGGGGGA AGATGAAGTT ATCGTTCATA GAAAATGATT CAGTGAGGAA | 50 |
AACAACATTC ACCAAAAGGA AGAAAGGGAT GCTGAAGAAA TTCAACGAGC | 100 |
TAGTAACTCT ATGTGGTGTT GACGCATGTG CGGTCATCCG TAGCCCGTAC | 150 |
AACTCGATCC AGGAGCCTTG GCCATCAAGG GAAGGCGTTG AAGAAGTGAT | 200 |
GTCGAAGTTT ATGGAGTTTT CGGTGTTGGA CCGGACCAAG AAGATGGTGG | 250 |
ATCAAGAGAC GTTTTTACGT CAAAGGATCG CCAAAGAAAC AGAACGTCTC | 300 |
CAGAAGCTAC GTGATGAGAA CCGTAATTCT CAGATTCGAG ATTTAATGTT | 350 |
TGGTTGTCTC AAAGGAGAGG TGGACGTGTC TCATCTTCAT GGAAGAGATC | 400 |
TTCTTGATTT GAATGTATTT CTTAACAAGT ATCTCAATGG TGTTATTCGT | 450 |
AGGGTTGAGA TCCTTAAGGA GAACGGTGAG TCTTCTTCAT CTGTACCTCC | 500 |
TCCTATTGGT GTAGCTCCTA CTGTTGTGGA TGCATCTGTC CCAATCGGTT | 550 |
TTGATGGTCG TATGATTCAA GATCAAAACC AAAATCAGCA AGAGCCGGTT | 600 |
CAATTCCAAT ACCAGGCTCT TTATGATTTT TATGATCAGA TTCCAAAGAA | 650 |
ACTTCATGAT TTTAACATGA AAATGAATAT AGATCCAAAT CAGAGTATGA | 700 |
ATTTGGATCT TAATGATGGA GAGGACGAGG GCATTCCTTG CATGGACAAC | 750 |
AACAACTACC ACCCCGAAAT CGATTGTCTC GCTACCGTCA CCACTGCCCC | 800 |
CACTGATGTT TGTGCTCCTA ACATCATCAA TGATCTCTAG | 850 |
>AT1G65330.1 longest ORF length:279
MRGKMKLSFI ENDSVRKTTF TKRKKGMLKK FNELVTLCGV DACAVIRSPY | 50 |
NSIQEPWPSR EGVEEVMSKF MEFSVLDRTK KMVDQETFLR QRIAKETERL | 100 |
QKLRDENRNS QIRDLMFGCL KGEVDVSHLH GRDLLDLNVF LNKYLNGVIR | 150 |
RVEILKENGE SSSSVPPPIG VAPTVVDASV PIGFDGRMIQ DQNQNQQEPV | 200 |
QFQYQALYDF YDQIPKKLHD FNMKMNIDPN QSMNLDLNDG EDEGIPCMDN | 250 |
NNYHPEIDCL ATVTTAPTDV CAPNIINDL | 300 |
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