fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G65330 AGL37, PHE1 PHERES1, AGAMOUS-like 37, MADS-box transcription factor family protein (.1)

>AT1G65330.1 CDS map

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Uncut enzymes: AatII, Acc65I, AccI, AccII(FnuDII), AccIII(BspMII), AciI, AclI, AfeI, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AseI, AvaI, AvrII, BaeI, BamHI, BanI, BanII, BbsI, BbvCI, BbvI, BcgI, BciVI, BglI, BlpI, BmrI, BpmI, BsaHI, BsaI, BsaXI, BseRI, BsgI, BsiEI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, BspEI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrGI, BsrI, BssHII, BssSI, BstBI, BstEII, BstUI, BstZ17I, Bsu36I, BtgI, BtrI, BtsI, Cac8I, DraI, DraIII, DrdI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRI, EcoRV, FauI, Fnu4HI, FokI, FseI, FspI, HaeII, HgaI, HhaI, HinP1I, HindIII, HpaI, HphI, Hpy99I, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MspA1I, NaeI, , NarI, NciI, NcoI, NdeI, NgoMIV, NheI, NotI, NruI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspOMI, PstI, PvuI, PvuII, RsrII, SacI, SacII, SalI, SapI, SbfI, ScaI, SexAI, SfaNI, SfcI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SpeI, SphI, SspI, StuI, SwaI, TliI, TseI, Tth111I, XbaI, XhoI, XmaI
Name Recognition sequence Cut positions
AflII C|TTAAG 463
AflIII A|CPuPyGT 374
AluI AG|CT 96, 303, 511
ApoI Pu|AATTPy 88, 699
AvaII G|G[AT]CC 227, 232
BalI TGG|CCA 169
BclI T|GATCA 633
BfaI C|TAG 98, 835
BglII A|GATCT 396
BsaAI PyAC|GTPu 308
BsaBI GATNN|NNATC 686
BsaJI C|CNNGG 166
BsaWI [AT]|CCGG[AT] 230
BsiHKAI G[AT]GC[AT]|C 812
BslI CCNNNNN|NNGG 504, 611
Bsp1286I G[GAT]GC[CAT]|C 812
BspDI AT|CGAT 769
BspHI T|CATGA 654
BsrFI Pu|CCGGPy 594
BssKI |CCNGG 158, 611
BstAPI GCANNNN|NTGC 736
BstF5I GGATGNN| 78, 529
BstNI CC|[AT]GG 158, 611
BstXI CCANNNNN|NTGG 242
BstYI Pu|GATCPy 396, 458, 681, 705
Cfr10I [AG]|CCGG[TC] 594
ClaI AT|CGAT 769
DdeI C|TNAG 328
DpnI GA-CH3|TC 154, 248, 274, 395, 457, 569, 632, 680, 704, 830
DpnII |GATC 154, 248, 274, 395, 457, 569, 632, 680, 704, 830
EaeI Py|GGCCPu 169
HaeIII GG|CC 168
HincII GTPy|PuAC 118
HinfI G|ANTC 36, 332, 477, 563, 638
HpaII C|CGG 229, 593
Hpy188I TCN|GA 329, 635, 689
HpyCH4III ACN|GT 319, 472, 519, 783
HpyCH4IV A|CGT 257, 265, 292, 307, 372
HpyCH4V TG|CA 529, 737
MboI |GATC 154, 248, 274, 395, 457, 569, 632, 680, 704, 830
MscI TGG|CCA 169
MseI T|TAA 341, 420, 462, 660, 708
MslI CAPyNN|NNPuTG 386, 670
MspI C|CGG 229, 593
MwoI GCNNNNN|NNGC 736
N.BstNBI GAGTCNNNN|N 482
NlaIII CATG| 123, 386, 653, 664, 739
NlaIV GGN|NCC 162
NsiI ATGCA|T 530
NspI PuCATG|Py 124
PspGI |CC[AT]GG 158, 611
RsaI GT|AC 145, 491
Sau3AI |GATC 154, 248, 274, 395, 457, 569, 632, 680, 704, 830
Sau96I G|GNCC 227, 232
ScrFI CC|NGG 158, 611
SmlI C|TPyPuAG 463
StyI C|C[AT][AT]GG 166
Taqƒ¿I T|CGA 152, 200, 334, 768
TfiI G|A[AT]TC 36, 332, 563, 638
Tsp45I |GT[CG]AC 786
Tsp509I |AATT 87, 323, 600, 698
TspRI NNCA[CG]TGNN| 42, 793, 802
XcmI CCANNNNN|NNNNTGG 245
XmnI GAANN|NNTTC 88


Click here to view TAIR data

>AT1G65330.1 length:840
ATGAGGGGGA AGATGAAGTT ATCGTTCATA GAAAATGATT CAGTGAGGAA 
50
AACAACATTC ACCAAAAGGA AGAAAGGGAT GCTGAAGAAA TTCAACGAGC 
100
TAGTAACTCT ATGTGGTGTT GACGCATGTG CGGTCATCCG TAGCCCGTAC 
150
AACTCGATCC AGGAGCCTTG GCCATCAAGG GAAGGCGTTG AAGAAGTGAT 
200
GTCGAAGTTT ATGGAGTTTT CGGTGTTGGA CCGGACCAAG AAGATGGTGG 
250
ATCAAGAGAC GTTTTTACGT CAAAGGATCG CCAAAGAAAC AGAACGTCTC 
300
CAGAAGCTAC GTGATGAGAA CCGTAATTCT CAGATTCGAG ATTTAATGTT 
350
TGGTTGTCTC AAAGGAGAGG TGGACGTGTC TCATCTTCAT GGAAGAGATC 
400
TTCTTGATTT GAATGTATTT CTTAACAAGT ATCTCAATGG TGTTATTCGT 
450
AGGGTTGAGA TCCTTAAGGA GAACGGTGAG TCTTCTTCAT CTGTACCTCC 
500
TCCTATTGGT GTAGCTCCTA CTGTTGTGGA TGCATCTGTC CCAATCGGTT 
550
TTGATGGTCG TATGATTCAA GATCAAAACC AAAATCAGCA AGAGCCGGTT 
600
CAATTCCAAT ACCAGGCTCT TTATGATTTT TATGATCAGA TTCCAAAGAA 
650
ACTTCATGAT TTTAACATGA AAATGAATAT AGATCCAAAT CAGAGTATGA 
700
ATTTGGATCT TAATGATGGA GAGGACGAGG GCATTCCTTG CATGGACAAC 
750
AACAACTACC ACCCCGAAAT CGATTGTCTC GCTACCGTCA CCACTGCCCC 
800
CACTGATGTT TGTGCTCCTA ACATCATCAA TGATCTCTAG 
850

>AT1G65330.1 longest ORF length:279
MRGKMKLSFI ENDSVRKTTF TKRKKGMLKK FNELVTLCGV DACAVIRSPY 
50
NSIQEPWPSR EGVEEVMSKF MEFSVLDRTK KMVDQETFLR QRIAKETERL 
100
QKLRDENRNS QIRDLMFGCL KGEVDVSHLH GRDLLDLNVF LNKYLNGVIR 
150
RVEILKENGE SSSSVPPPIG VAPTVVDASV PIGFDGRMIQ DQNQNQQEPV 
200
QFQYQALYDF YDQIPKKLHD FNMKMNIDPN QSMNLDLNDG EDEGIPCMDN 
250
NNYHPEIDCL ATVTTAPTDV CAPNIINDL
300