fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G66350 RGL1 RGA-like 1 (.1)

>AT1G66350.1 CDS map

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Uncut enzymes: AatII, AccI, AccIII(BspMII), AclI, AfeI, AflII, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaLI, AscI, AseI, BaeI, BalI, BamHI, BbsI, BbvCI, BbvI, BcgI, BciVI, BclI, BglI, BglII, BlpI, BmrI, BpmI, BsaBI, BsaHI, BsaI, BsaXI, BseRI, BsgI, BsiWI, BslI, BsmAI, BsmBI, BsmFI, BsmI, BspEI, BspHI, BspMI, BsrBI, BsrDI, BsrGI, BssHII, BstEII, BstXI, BstZ17I, Bsu36I, BtrI, DraIII, DrdI, EagI, EarI, EciI, EcoNI, EcoRV, FauI, FokI, FseI, HaeII, HgaI, HphI, I-CeuI, I-SceI, KasI, MboII, MfeI, MlyI, MnlI, MscI, MspA1I, , NarI, NdeI, NheI, NotI, NsiI, PI-PspI, PI-SceI(VDE), PacI, PciI, PflMI, PleI, PmeI, PpuMI, PsiI, PvuII, RsrII, SacI, SacII, SalI, SapI, SbfI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SpeI, SspI, StuI, SwaI, XbaI, XcmI, XmaI
Name Recognition sequence Cut positions
Acc65I G|GTACC 1153
AccII(FnuDII) CG|CG 408, 460, 514, 541, 574, 637, 1387, 1485
AciI C|CGC 30, 1223, 1490
AflIII A|CPuPyGT 1388
AgeI A|CCGGT 1343, 1368
AluI AG|CT 79, 96, 156, 319, 469, 481, 553, 814, 912, 1041, 1057, 1199
ApaI GGGCC|C 1221
ApoI Pu|AATTPy 943
AvaI C|PyCGPuG 626, 1216
AvaII G|G[AT]CC 837
AvrII C|CTAGG 1260
BanI G|GPyPuCC 1153
BanII GPuGCPy|C 1221
BfaI C|TAG 992, 1259
BsaAI PyAC|GTPu 347, 358, 529
BsaJI C|CNNGG 786, 1260, 1427
BsaWI [AT]|CCGG[AT] 843, 984, 1110, 1343, 1368
BsiEI CGPuPy|CG 1108, 1167, 1489
BsiHKAI G[AT]GC[AT]|C 10, 355
BsoBI C|PyCGPuG 626, 1216
Bsp1286I G[GAT]GC[CAT]|C 10, 355, 1221
BspDI AT|CGAT 1075
BspT107I(HgiCI) G|G[TC][AG]CC 1153
BsrFI Pu|CCGGPy 801, 1343, 1368
BsrI ACTGGN| 442
BssKI |CCNGG 280, 327, 859, 1005, 1065, 1304, 1426
BssSI C|TCGTG 520
BstAPI GCANNNN|NTGC 1422, 1506
BstBI TT|CGAA 940, 1383
BstF5I GGATGNN| 1478
BstNI CC|[AT]GG 327
BstUI CG|CG 408, 460, 514, 541, 574, 637, 1387, 1485
BstYI Pu|GATCPy 267
BtgI C|CPuPyGG 786
BtsI GCAGTGNN| 339
Cac8I GCN|NGC 257, 597, 801, 915, 1223, 1288, 1398
Cfr10I [AG]|CCGG[TC] 801, 1343, 1368
ClaI AT|CGAT 1075
DdeI C|TNAG 302, 315, 1055
DpnI GA-CH3|TC 126, 233, 266, 311, 862, 974, 1166
DpnII |GATC 126, 233, 266, 311, 862, 974, 1166
DraI TTT|AAA 960, 1326, 1363
EaeI Py|GGCCPu 799
EcoO109I PuG|GNCCPy 1221
EcoRI G|AATTC 943
Fnu4HI GC|NGC 81
FspI TGC|GCA 705
HaeIII GG|CC 798, 1220
HhaI GCG|C 409, 461, 515, 704
HinP1I G|CGC 409, 461, 515, 704
HincII GTPy|PuAC 91, 855, 876, 1027
HindIII A|AGCTT 157
HinfI G|ANTC 24, 190, 197, 284, 300, 362, 390, 429, 668, 681, 719, 809, 1014, 1179, 1209, 1516
HpaI GTT|AAC 855, 876, 1027
HpaII C|CGG 33, 84, 280, 800, 842, 858, 983, 1005, 1065, 1109, 1303, 1342, 1367, 1425
Hpy188I TCN|GA 132, 204, 231, 264, 303, 368, 393, 654, 665, 972, 1105, 1248
Hpy99I CG[AT]CG| 61, 366, 512
HpyCH4III ACN|GT 19, 63, 164, 213, 613, 1122, 1150, 1155
HpyCH4IV A|CGT 144, 346, 357, 528, 826
HpyCH4V TG|CA 334, 1498
KpnI GGTAC|C 1153
MboI |GATC 126, 233, 266, 311, 862, 974, 1166
MluI A|CGCGT 1388
MseI T|TAA 69, 780, 854, 875, 959, 978, 1026, 1325, 1362
MslI CAPyNN|NNPuTG 677, 1509
MspI C|CGG 33, 84, 280, 800, 842, 858, 983, 1005, 1065, 1109, 1303, 1342, 1367, 1425
MwoI GCNNNNN|NNGC 147, 468, 524, 723, 1228, 1422, 1478, 1506
N.BstNBI GAGTCNNNN|N 686
NaeI GCC|GGC 801
NciI CC|[CG]GG 280, 859, 1005, 1065, 1304, 1426
NcoI C|CATGG 786
NgoMIV G|CCGGC 801
NlaIII CATG| 136, 256, 761, 785, 1287, 1316, 1405
NlaIV GGN|NCC 1069, 1153, 1221
NruI TCG|CGA 575
NspI PuCATG|Py 257, 1288, 1406
PaeR7I C|TCGAG 626, 1216
PflFI GACN|NNGTC 634
PmlI CAC|GTG 347, 358, 529
PshAI GACNN|NNGTC 1126
PspGI |CC[AT]GG 327
PspOMI G|GGCCC 1221
PstI CTGCA|G 335
PvuI CGAT|CG 1167
RsaI GT|AC 307, 921, 1152
Sau3AI |GATC 126, 233, 266, 311, 862, 974, 1166
Sau96I G|GNCC 837, 1220
ScaI AGT|ACT 922
ScrFI CC|NGG 280, 327, 859, 1005, 1065, 1304, 1426
SfcI C|TPuPyAG 335
SmlI C|TPyPuAG 434, 551, 626, 697, 733, 1216
SphI GCATG|C 257, 1288
StyI C|C[AT][AT]GG 786, 1260
Taqƒ¿I T|CGA 124, 194, 249, 625, 939, 1038, 1074, 1088, 1128, 1164, 1196, 1206, 1215, 1382
TfiI G|A[AT]TC 24, 190, 197, 284, 390, 429, 668, 719, 809, 1014, 1179, 1516
TliI C|TCGAG 626, 1216
TseI G|C[AT]GC 81
Tsp45I |GT[CG]AC 349, 360
Tsp509I |AATT 385, 497, 935, 942, 965
TspRI NNCA[CG]TGNN| 339, 1020, 1334
Tth111I GACN|NNGTC 634
XhoI C|TCGAG 626, 1216
XmnI GAANN|NNTTC 215, 485


Click here to view TAIR data

>AT1G66350.1 length:1536
ATGAAGAGAG AGCACAACCA CCGTGAATCA TCCGCCGGAG AAGGTGGGAG 
50
TTCATCAATG ACGACGGTGA TTAAAGAAGA AGCTGCCGGA GTTGACGAGC 
100
TTTTGGTTGT TTTAGGTTAC AAAGTTCGAT CATCCGACAT GGCTGACGTG 
150
GCACACAAGC TTGAACAGTT AGAGATGGTT CTTGGTGATG GAATCTCGAA 
200
TCTTTCTGAT GAAACTGTTC ATTACAATCC TTCTGATCTC TCTGGTTGGG 
250
TCGAAAGCAT GCTCTCGGAT CTTGACCCGA CCCGGATTCA AGAAAAGCCT 
300
GACTCAGAGT ACGATCTTAG AGCTATTCCT GGCTCTGCAG TGTATCCACG 
350
TGACGAGCAC GTGACTCGTC GGAGCAAGAG GACGAGAATT GAATCGGAGT 
400
TATCCTCTAC GCGCTCTGTG GTGGTTTTGG ATTCTCAAGA AACTGGAGTG 
450
CGTTTAGTCC ACGCGCTATT AGCTTGTGCT GAAGCTGTTC AACAGAACAA 
500
TTTGAAGTTA GCCGACGCGC TCGTGAAGCA CGTGGGGTTA CTCGCGTCCT 
550
CTCAAGCTGG TGCTATGAGG AAAGTCGCGA CTTACTTCGC TGAAGGGCTT 
600
GCGAGAAGGA TTTACCGTAT TTACCCTCGA GACGATGTCG CGTTGTCTTC 
650
GTTTTCGGAC ACTCTTCAGA TTCATTTCTA TGAGTCTTGT CCGTATCTCA 
700
AGTTTGCGCA TTTTACGGCG AATCAAGCGA TACTTGAGGT TTTTGCTACG 
750
GCGGAGAAGG TTCATGTTAT TGATTTAGGA CTTAACCATG GTTTACAATG 
800
GCCGGCTTTG ATTCAAGCTC TTGCTTTACG TCCTAATGGT CCACCGGATT 
850
TTCGGTTAAC CGGGATCGGT TATTCGTTAA CCGATATTCA AGAAGTTGGT 
900
TGGAAACTTG GTCAGCTTGC GAGTACTATT GGTGTCAATT TCGAATTCAA 
950
GAGCATTGCT TTAAACAATT TGTCTGATCT TAAACCGGAA ATGCTAGACA 
1000
TTAGACCCGG TTTAGAATCA GTGGCGGTTA ACTCGGTCTT CGAGCTTCAT 
1050
CGCCTCTTAG CTCATCCCGG TTCCATCGAT AAGTTTTTAT CGACAATCAA 
1100
ATCAATCCGA CCGGATATAA TGACTGTGGT CGAGCAAGAA GCAAACCATA 
1150
ACGGTACCGT ATTTCTCGAT CGGTTCACGG AATCGCTACA TTACTATTCG 
1200
AGCTTATTCG ACTCGCTCGA GGGCCCGCCA AGCCAAGACC GAGTGATGTC 
1250
GGAGTTATTC CTAGGACGGC AGATACTAAA CCTTGTGGCA TGCGAAGGAG 
1300
AAGACCGGGT AGAGAGGCAT GAGACTTTAA ATCAGTGGAG AAACCGGTTC 
1350
GGTTTAGGAG GATTTAAACC GGTTAGTATC GGTTCGAACG CGTATAAGCA 
1400
AGCAAGCATG TTGTTGGCAC TTTATGCCGG GGCTGATGGG TATAATGTGG 
1450
AAGAGAATGA AGGTTGTTTG TTGCTTGGAT GGCAAACGCG ACCGCTTATT 
1500
GCAACATCTG CGTGGCGAAT CAATCGTGTG GAATAA
1550

>AT1G66350.1 longest ORF length:511
MKREHNHRES SAGEGGSSSM TTVIKEEAAG VDELLVVLGY KVRSSDMADV 
50
AHKLEQLEMV LGDGISNLSD ETVHYNPSDL SGWVESMLSD LDPTRIQEKP 
100
DSEYDLRAIP GSAVYPRDEH VTRRSKRTRI ESELSSTRSV VVLDSQETGV 
150
RLVHALLACA EAVQQNNLKL ADALVKHVGL LASSQAGAMR KVATYFAEGL 
200
ARRIYRIYPR DDVALSSFSD TLQIHFYESC PYLKFAHFTA NQAILEVFAT 
250
AEKVHVIDLG LNHGLQWPAL IQALALRPNG PPDFRLTGIG YSLTDIQEVG 
300
WKLGQLASTI GVNFEFKSIA LNNLSDLKPE MLDIRPGLES VAVNSVFELH 
350
RLLAHPGSID KFLSTIKSIR PDIMTVVEQE ANHNGTVFLD RFTESLHYYS 
400
SLFDSLEGPP SQDRVMSELF LGRQILNLVA CEGEDRVERH ETLNQWRNRF 
450
GLGGFKPVSI GSNAYKQASM LLALYAGADG YNVEENEGCL LLGWQTRPLI 
500
ATSAWRINRV E
550