fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G67260 TCP1 TCP family transcription factor (.1.2)

>AT1G67260.2 CDS map

>>Show genomic map




Uncut enzymes: AatII, Acc65I, AccI, AccII(FnuDII), AccIII(BspMII), AciI, AfeI, AflII, AflIII, AgeI, AhdI, AlwI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AseI, AvrII, BaeI, BamHI, BanI, BbsI, BbvCI, BbvI, BcgI, BciVI, BglII, BlpI, BmrI, BpmI, BsaAI, BsaBI, BsaHI, BsaI, BsaWI, BsaXI, BseRI, BsgI, BsiEI, BsiHKAI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BspEI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrFI, BsrGI, BssHII, BssSI, BstAPI, BstBI, BstEII, BstNI, BstUI, BstXI, BstYI, BstZ17I, BtgI, BtrI, BtsI, Cfr10I, DraI, DraIII, DrdI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HaeII, HgaI, HhaI, HinP1I, HincII, HindIII, HpaI, HphI, Hpy99I, HpyCH4V, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MslI, MspA1I, N.BstNBI, NaeI, , NarI, NcoI, NgoMIV, NheI, NotI, NruI, NsiI, NspI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspGI, PspOMI, PstI, PvuI, PvuII, RsrII, SacI, SacII, SalI, SapI, SbfI, ScaI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SnaBI, SpeI, SphI, SspI, StuI, StyI, SwaI, TliI, TspRI, Tth111I, XbaI, XcmI, XhoI, XmnI
Name Recognition sequence Cut positions
AclI AA|CGTT 387
AluI AG|CT 376, 536, 661
AlwNI CAGNNN|CTG 155, 719
ApoI Pu|AATTPy 966, 1032
AvaI C|PyCGPuG 559
AvaII G|G[AT]CC 263, 752
BalI TGG|CCA 81
BanII GPuGCPy|C 555
BclI T|GATCA 984
BfaI C|TAG 378, 650, 663, 933
BglI GCCNNNN|NGGC 597
BsaJI C|CNNGG 558
BslI CCNNNNN|NNGG 564
BsoBI C|PyCGPuG 559
Bsp1286I G[GAT]GC[CAT]|C 555
BspDI AT|CGAT 169
BspHI T|CATGA 999
BsrI ACTGGN| 395
BssKI |CCNGG 132, 558
BstF5I GGATGNN| 520
Bsu36I CC|TNAGG 227
Cac8I GCN|NGC 334
ClaI AT|CGAT 169
DdeI C|TNAG 226
DpnI GA-CH3|TC 166, 347, 923, 983
DpnII |GATC 166, 347, 923, 983
EaeI Py|GGCCPu 81
Fnu4HI GC|NGC 398, 937
HaeIII GG|CC 80, 134, 589, 700
HinfI G|ANTC 159, 203, 278, 843, 863
HpaII C|CGG 131, 558
Hpy188I TCN|GA 164, 726, 741, 926
HpyCH4III ACN|GT 565
HpyCH4IV A|CGT 386
MboI |GATC 166, 347, 923, 983
MscI TGG|CCA 81
MseI T|TAA 119, 183, 851
MspI C|CGG 131, 558
MwoI GCNNNNN|NNGC 535, 597
NciI CC|[CG]GG 132, 558
NdeI CA|TATG 139
NlaIII CATG| 175, 748, 998
NlaIV GGN|NCC 655, 753, 816
RsaI GT|AC 46, 434, 562
Sau3AI |GATC 166, 347, 923, 983
Sau96I G|GNCC 134, 263, 752
ScrFI CC|NGG 132, 558
SfcI C|TPuPyAG 770
SmaI CCC|GGG 559
SmlI C|TPyPuAG 403
Taqƒ¿I T|CGA 168, 822
TfiI G|A[AT]TC 159, 203, 278, 843
TseI G|C[AT]GC 398, 937
Tsp45I |GT[CG]AC 1020
Tsp509I |AATT 339, 965, 1031
XmaI C|CCGGG 559


Click here to view TAIR data

>AT1G67260.2 length:1056
ATGTCGTCTT CCACCAATGA CTACAACGAT GGTAATAACA ATGGAGTGTA 
50
CCCTCTCTCT CTTTACCTTT CTTCACTCTC TGGCCATCAA GACATCATTC 
100
ATAATCCCTA CAACCATCAG TTAAAAGCAT CTCCGGGCCA TATGGTATCA 
150
GCAGTTCCTG AATCTCTGAT CGATTACATG GCGTTTAAGT CAAATAATGT 
200
TGTGAATCAA CAAGGCTTTG AGTTTCCTGA GGTGTCAAAG GAAATCAAGA 
250
AGGTGGTGAA GAAGGACCGA CATAGCAAGA TTCAAACGGC ACAAGGGATT 
300
AGAGACAGGA GGGTTAGGCT TTCTATTGGG ATTGCTCGCC AATTCTTTGA 
350
TCTTCAGGAT ATGTTGGGGT TTGATAAAGC TAGTAAAACG TTAGACTGGC 
400
TGCTCAAGAA GTCAAGAAAA GCCATCAAAG AGGTCGTACA AGCAAAAAAC 
450
CTCAACAATG ATGATGAAGA TTTTGGAAAC ATTGGAGGCG ATGTAGAACA 
500
AGAAGAGGAG AAGGAGGAGG ATGACAATGG CGATAAGAGC TTCGTGTATG 
550
GTTTGAGCCC CGGGTACGGT GAAGAAGAAG TGGTATGTGA GGCCACGAAG 
600
GCAGGGATAA GAAAGAAGAA GAGTGAGTTG AGAAACATCT CATCAAAGGG 
650
GCTAGGAGCC AAAGCTAGAG GAAAAGCAAA GGAGCGAACA AAAGAGATGA 
700
TGGCCTATGA TAATCCAGAG ACTGCCTCTG ATATTACACA ATCTGAAATC 
750
ATGGACCCAT TCAAGAGGTC TATAGTCTTC AATGAAGGAG AAGATATGAC 
800
ACACCTTTTC TACAAGGAAC CAATCGAGGA GTTTGATAAT CAAGAATCTA 
850
TCTTAACCAA TATGACTCTA CCAACGAAGA TGGGTCAAAG TTACAATCAA 
900
AATAATGGGA TACTTATGTT GGTAGATCAG AGTTCTAGCA GCAACTATAA 
950
TACATTTCTG CCTCAAAATT TGGATTATAG TTATGATCAA AACCCTTTTC 
1000
ATGACCAAAC CTTATATGTA GTCACCGACA AAAATTTCCC CAAAGGTTTC 
1050
CTATAA
1100

>AT1G67260.2 longest ORF length:351
MSSSTNDYND GNNNGVYPLS LYLSSLSGHQ DIIHNPYNHQ LKASPGHMVS 
50
AVPESLIDYM AFKSNNVVNQ QGFEFPEVSK EIKKVVKKDR HSKIQTAQGI 
100
RDRRVRLSIG IARQFFDLQD MLGFDKASKT LDWLLKKSRK AIKEVVQAKN 
150
LNNDDEDFGN IGGDVEQEEE KEEDDNGDKS FVYGLSPGYG EEEVVCEATK 
200
AGIRKKKSEL RNISSKGLGA KARGKAKERT KEMMAYDNPE TASDITQSEI 
250
MDPFKRSIVF NEGEDMTHLF YKEPIEEFDN QESILTNMTL PTKMGQSYNQ 
300
NNGILMLVDQ SSSSNYNTFL PQNLDYSYDQ NPFHDQTLYV VTDKNFPKGF 
350
L
400